Suppr超能文献

碰撞网络问题及其与细胞融合和癌症的关系。

The problem of colliding networks and its relation to cell fusion and cancer.

机构信息

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.

出版信息

Biophys J. 2012 Nov 7;103(9):2011-20. doi: 10.1016/j.bpj.2012.08.062.

Abstract

Cell fusion, a process that merges two or more cells into one, is required for normal development and has been explored as a tool for stem cell therapy. It has also been proposed that cell fusion causes cancer and contributes to its progression. These functions rely on a poorly understood ability of cell fusion to create new cell types. We suggest that this ability can be understood by considering cells as attractor networks whose basic property is to adopt a set of distinct, stable, self-maintaining states called attractors. According to this view, fusion of two cell types is a collision of two networks that have adopted distinct attractors. To learn how these networks reach a consensus, we model cell fusion computationally. To do so, we simulate patterns of gene activities using a formalism developed to simulate patterns of memory in neural networks. We find that the hybrid networks can assume attractors that are unrelated to parental attractors, implying that cell fusion can create new cell types by nearly instantaneously moving cells between attractors. We also show that hybrid networks are prone to assume spurious attractors, which are emergent and sporadic network states. This finding means that cell fusion can produce abnormal cell types, including cancerous types, by placing cells into normally inaccessible spurious states. Finally, we suggest that the problem of colliding networks has general significance in many processes represented by attractor networks, including biological, social, and political phenomena.

摘要

细胞融合,即将两个或多个细胞合并为一个的过程,是正常发育所必需的,并且已被探索作为干细胞治疗的工具。也有人提出细胞融合会导致癌症,并促进其进展。这些功能依赖于细胞融合形成新细胞类型的能力,而这种能力目前还了解甚少。我们认为,可以通过将细胞视为吸引子网络来理解这种能力,其基本属性是采用一组独特的、稳定的、自我维持的状态,称为吸引子。根据这一观点,两种细胞类型的融合是两个已经采用不同吸引子的网络的碰撞。为了了解这些网络如何达成共识,我们从计算角度对细胞融合进行建模。为此,我们使用一种形式化方法模拟基因活动模式,该方法用于模拟神经网络中的记忆模式。我们发现,杂交网络可以采用与亲本吸引子无关的吸引子,这意味着细胞融合可以通过在吸引子之间几乎瞬间移动细胞来创建新的细胞类型。我们还表明,杂交网络容易采用虚假吸引子,即突发和偶然的网络状态。这一发现意味着,通过将细胞置于通常无法进入的虚假状态,细胞融合可以产生异常的细胞类型,包括癌变类型。最后,我们提出,在许多由吸引子网络表示的过程中,包括生物、社会和政治现象,碰撞网络的问题具有普遍意义。

相似文献

1
The problem of colliding networks and its relation to cell fusion and cancer.
Biophys J. 2012 Nov 7;103(9):2011-20. doi: 10.1016/j.bpj.2012.08.062.
3
Common Attractors in Multiple Boolean Networks.
IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):2862-2873. doi: 10.1109/TCBB.2023.3268795. Epub 2023 Oct 9.
4
ILP/SMT-Based Method for Design of Boolean Networks Based on Singleton Attractors.
IEEE/ACM Trans Comput Biol Bioinform. 2014 Nov-Dec;11(6):1253-9. doi: 10.1109/TCBB.2014.2325011.
6
Coexistence of Cyclic Sequential Pattern Recognition and Associative Memory in Neural Networks by Attractor Mechanisms.
IEEE Trans Neural Netw Learn Syst. 2025 Mar;36(3):4959-4970. doi: 10.1109/TNNLS.2024.3368092. Epub 2025 Feb 28.
8
Control of asymmetric Hopfield networks and application to cancer attractors.
PLoS One. 2014 Aug 29;9(8):e105842. doi: 10.1371/journal.pone.0105842. eCollection 2014.
10
An efficient approach of attractor calculation for large-scale Boolean gene regulatory networks.
J Theor Biol. 2016 Nov 7;408:137-144. doi: 10.1016/j.jtbi.2016.08.006. Epub 2016 Aug 11.

引用本文的文献

1
Adopted neoplastic cells and the consequences of their existence.
Oncotarget. 2023 Apr 14;14:321-341. doi: 10.18632/oncotarget.28408.
2
Generation of Cancer Stem/Initiating Cells by Cell-Cell Fusion.
Int J Mol Sci. 2022 Apr 19;23(9):4514. doi: 10.3390/ijms23094514.
3
4
Cell-Cell Fusion Mediated by Viruses and HERV-Derived Fusogens in Cancer Initiation and Progression.
Cancers (Basel). 2021 Oct 26;13(21):5363. doi: 10.3390/cancers13215363.
5
Hybrid Formation and Fusion of Cancer Cells In Vitro and In Vivo.
Cancers (Basel). 2021 Sep 6;13(17):4496. doi: 10.3390/cancers13174496.
6
Spontaneous cell fusions as a mechanism of parasexual recombination in tumour cell populations.
Nat Ecol Evol. 2021 Mar;5(3):379-391. doi: 10.1038/s41559-020-01367-y. Epub 2021 Jan 18.
7
Interneuron Types as Attractors and Controllers.
Annu Rev Neurosci. 2020 Jul 8;43:1-30. doi: 10.1146/annurev-neuro-070918-050421. Epub 2019 Jul 12.
8
Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks.
NPJ Syst Biol Appl. 2016 Feb 18;2:16001. doi: 10.1038/npjsba.2016.1. eCollection 2016.
10
The shock of being united and symphiliosis. Another lesson from plants?
Cell Cycle. 2014;13(15):2323-9. doi: 10.4161/cc.29704.

本文引用的文献

1
Reprogramming somatic cells towards pluripotency by cellular fusion.
Curr Opin Genet Dev. 2012 Oct;22(5):459-65. doi: 10.1016/j.gde.2012.07.005. Epub 2012 Aug 3.
2
HIV-infected T cells are migratory vehicles for viral dissemination.
Nature. 2012 Oct 11;490(7419):283-7. doi: 10.1038/nature11398. Epub 2012 Aug 1.
3
Spontaneous formation of tumorigenic hybrids between breast cancer and multipotent stromal cells is a source of tumor heterogeneity.
Am J Pathol. 2012 Jun;180(6):2504-15. doi: 10.1016/j.ajpath.2012.02.020. Epub 2012 Apr 27.
5
Embryonic stem cells induce pluripotency in somatic cell fusion through biphasic reprogramming.
Mol Cell. 2012 Apr 27;46(2):159-70. doi: 10.1016/j.molcel.2012.02.013. Epub 2012 Mar 22.
6
The genetic basis for cancer treatment decisions.
Cell. 2012 Feb 3;148(3):409-20. doi: 10.1016/j.cell.2012.01.014.
8
Sparse incomplete representations: a potential role of olfactory granule cells.
Neuron. 2011 Oct 6;72(1):124-36. doi: 10.1016/j.neuron.2011.07.031.
10
Heterogeneity maintenance in glioblastoma: a social network.
Cancer Res. 2011 Jun 15;71(12):4055-60. doi: 10.1158/0008-5472.CAN-11-0153. Epub 2011 May 31.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验