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影响人类红细胞的 75 个遗传位点。

Seventy-five genetic loci influencing the human red blood cell.

机构信息

Department of Cardiology, University of Groningen, University Medical Center Groningen, 9700 RB Groningen, The Netherlands.

出版信息

Nature. 2012 Dec 20;492(7429):369-75. doi: 10.1038/nature11677. Epub 2012 Dec 5.

Abstract

Anaemia is a chief determinant of global ill health, contributing to cognitive impairment, growth retardation and impaired physical capacity. To understand further the genetic factors influencing red blood cells, we carried out a genome-wide association study of haemoglobin concentration and related parameters in up to 135,367 individuals. Here we identify 75 independent genetic loci associated with one or more red blood cell phenotypes at P < 10(-8), which together explain 4-9% of the phenotypic variance per trait. Using expression quantitative trait loci and bioinformatic strategies, we identify 121 candidate genes enriched in functions relevant to red blood cell biology. The candidate genes are expressed preferentially in red blood cell precursors, and 43 have haematopoietic phenotypes in Mus musculus or Drosophila melanogaster. Through open-chromatin and coding-variant analyses we identify potential causal genetic variants at 41 loci. Our findings provide extensive new insights into genetic mechanisms and biological pathways controlling red blood cell formation and function.

摘要

贫血是全球健康不良的主要决定因素,可导致认知障碍、生长迟缓以及身体机能受损。为了进一步了解影响红细胞的遗传因素,我们对多达 135367 个人的血红蛋白浓度和相关参数进行了全基因组关联研究。在这里,我们确定了 75 个独立的遗传位点,这些位点与一个或多个红细胞表型相关,P 值均小于 10(-8),每个特征的表型变异解释率为 4-9%。使用表达数量性状基因座和生物信息学策略,我们确定了 121 个候选基因,这些基因在与红细胞生物学相关的功能中富集。候选基因在红细胞前体中优先表达,并且在 Mus musculus 或 Drosophila melanogaster 中有 43 个具有造血表型。通过开放染色质和编码变异分析,我们在 41 个位点确定了潜在的因果遗传变异。我们的研究结果为控制红细胞形成和功能的遗传机制和生物学途径提供了广泛的新见解。

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