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Computer algorithms in the search for unrelated stem cell donors.

作者信息

Steiner David

机构信息

Department of Cybernetics, Czech Technical University in Prague, Karlovo Náměstí 13, 121 35 Prague 2, Czech Republic.

出版信息

Bone Marrow Res. 2012;2012:175419. doi: 10.1155/2012/175419. Epub 2012 Nov 1.

DOI:10.1155/2012/175419
PMID:23227341
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3501812/
Abstract

Hematopoietic stem cell transplantation (HSCT) is a medical procedure in the field of hematology and oncology, most often performed for patients with certain cancers of the blood or bone marrow. A lot of patients have no suitable HLA-matched donor within their family, so physicians must activate a "donor search process" by interacting with national and international donor registries who will search their databases for adult unrelated donors or cord blood units (CBU). Information and communication technologies play a key role in the donor search process in donor registries both nationally and internationaly. One of the major challenges for donor registry computer systems is the development of a reliable search algorithm. This work discusses the top-down design of such algorithms and current practice. Based on our experience with systems used by several stem cell donor registries, we highlight typical pitfalls in the implementation of an algorithm and underlying data structure.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b5a/3501812/3f10ceb8f9f6/BMR2012-175419.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b5a/3501812/cc1cba1ff219/BMR2012-175419.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b5a/3501812/d93b6b8491d9/BMR2012-175419.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b5a/3501812/3f10ceb8f9f6/BMR2012-175419.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b5a/3501812/cc1cba1ff219/BMR2012-175419.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b5a/3501812/d93b6b8491d9/BMR2012-175419.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b5a/3501812/3f10ceb8f9f6/BMR2012-175419.003.jpg

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Hapl-o-Mat: open-source software for HLA haplotype frequency estimation from ambiguous and heterogeneous data.单倍型矩阵(Hapl-o-Mat):用于从模糊和异质数据估计HLA单倍型频率的开源软件。
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本文引用的文献

1
World Marrow Donor Association framework for the implementation of HLA matching programs in hematopoietic stem cell donor registries and cord blood banks.世界骨髓捐献者协会在造血干细胞捐献者登记处和脐带血库中实施 HLA 匹配计划的框架。
Bone Marrow Transplant. 2011 Mar;46(3):338-43. doi: 10.1038/bmt.2010.132. Epub 2010 Jun 7.
2
Information technology and the role of WMDA in promoting standards for international exchange of hematopoietic stem cell donors and products.信息技术与世界骨髓捐献者协会在促进造血干细胞供者和产品国际交流标准方面的作用。
Bone Marrow Transplant. 2010 May;45(5):839-42. doi: 10.1038/bmt.2010.29. Epub 2010 Mar 1.
3
用于验证 HLA 匹配算法的比较参考研究,以寻找同种异体造血干细胞供体和脐血单位。
HLA. 2016 Jun;87(6):439-48. doi: 10.1111/tan.12817. Epub 2016 May 24.
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Management of multicellular senescence and oxidative stress.细胞衰老和氧化应激的管理。
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Overview of registries, HLA typing and diversity, and search algorithms.
登记处概述、人类白细胞抗原分型与多样性以及搜索算法。
Tissue Antigens. 2007 Apr;69 Suppl 1:3-5. doi: 10.1111/j.1399-0039.2006.758_2.x.
4
World Marrow Donor Association guidelines for use of HLA nomenclature and its validation in the data exchange among hematopoietic stem cell donor registries and cord blood banks.世界骨髓捐献者协会关于人类白细胞抗原(HLA)命名法的使用及其在造血干细胞捐献者登记处和脐血库数据交换中的验证指南。
Bone Marrow Transplant. 2007 Jun;39(12):737-41. doi: 10.1038/sj.bmt.1705672. Epub 2007 Apr 16.
5
Hematopoietic stem cell donor registry strategies for assigning search determinants and matching relationships.造血干细胞供体登记策略,用于确定搜索决定因素和匹配关系。
Bone Marrow Transplant. 2004 Feb;33(4):443-50. doi: 10.1038/sj.bmt.1704365.