Department of Signal Processing, Tampere University of Technology, Tampere, Finland.
PLoS One. 2013;8(3):e56523. doi: 10.1371/journal.pone.0056523. Epub 2013 Mar 13.
Boolean networks have been used as a discrete model for several biological systems, including metabolic and genetic regulatory networks. Due to their simplicity they offer a firm foundation for generic studies of physical systems. In this work we show, using a measure of context-dependent information, set complexity, that prior to reaching an attractor, random Boolean networks pass through a transient state characterized by high complexity. We justify this finding with a use of another measure of complexity, namely, the statistical complexity. We show that the networks can be tuned to the regime of maximal complexity by adding a suitable amount of noise to the deterministic Boolean dynamics. In fact, we show that for networks with Poisson degree distributions, all networks ranging from subcritical to slightly supercritical can be tuned with noise to reach maximal set complexity in their dynamics. For networks with a fixed number of inputs this is true for near-to-critical networks. This increase in complexity is obtained at the expense of disruption in information flow. For a large ensemble of networks showing maximal complexity, there exists a balance between noise and contracting dynamics in the state space. In networks that are close to critical the intrinsic noise required for the tuning is smaller and thus also has the smallest effect in terms of the information processing in the system. Our results suggest that the maximization of complexity near to the state transition might be a more general phenomenon in physical systems, and that noise present in a system may in fact be useful in retaining the system in a state with high information content.
布尔网络已被用作多个生物系统的离散模型,包括代谢和遗传调控网络。由于其简单性,它们为物理系统的通用研究提供了坚实的基础。在这项工作中,我们使用一种依赖于上下文的信息度量——集合复杂度来证明,在达到吸引子之前,随机布尔网络会经历一个以高复杂度为特征的暂态。我们使用另一种复杂度度量——统计复杂度来证明这一发现。我们表明,通过向确定性布尔动力学添加适当量的噪声,可以将网络调谐到最大复杂度的区域。实际上,我们表明,对于泊松度分布的网络,所有从亚临界到略超临界的网络都可以通过噪声调谐来在其动力学中达到最大集合复杂度。对于具有固定输入数量的网络,近临界网络就是如此。这种复杂度的增加是以信息流中断为代价的。对于显示最大复杂度的大型网络集合,在状态空间中存在噪声和收缩动力学之间的平衡。在接近临界的网络中,调谐所需的固有噪声较小,因此对系统中的信息处理的影响也最小。我们的结果表明,在状态转换附近最大化复杂度可能是物理系统中更普遍的现象,而系统中存在的噪声实际上可能有助于将系统保持在具有高信息量的状态。