Faculty of Chemistry, University of Warsaw, Pasteura 1, 02093, Warsaw, Poland.
J Biomol NMR. 2013 Jul;56(3):217-26. doi: 10.1007/s10858-013-9739-5. Epub 2013 May 9.
A band-selective aromatic-aliphatic C,C-edited four-dimensional NOESY experiment is proposed here. Its key advantage is the absence of auto-correlation signals which makes it very attractive for joint use with non-uniform sampling. It is demonstrated here that the sensitivity of the experiment is not significantly affected by utilization of selective pulses (for either aromatic-13C or aliphatic-13C spins). The method was applied to the sample of E32Q mutant of human S100A1 protein, a homodimer of total molecular mass ~20 kDa. High-resolution 4D spectra were obtained from ~1.5 % of sampling points required conventionally. It is shown that superior resolution facilitates unambiguous assignment of observed aliphatic-aromatic cross-peaks. Additionally, the addition of aliphatic-13C dimension enables to resolve peaks with degenerated aliphatic (1)H chemical shifts. All observed cross-peaks were validated against previously determined 3D structure of E32Q mutant of S100A1 protein (PDB 2LHL). The increased reliability of structural constraints obtained from the proposed high-resolution 4D 13C(ali),13C(aro)-edited NOESY can be exploited in the automated protocols of structure determination of proteins.
这里提出了一种选择性芳香族-脂肪族 C,C 编辑的四维 NOESY 实验。其主要优点是不存在自相关信号,这使其非常适合与非均匀采样联合使用。本文证明,实验的灵敏度不会因选择性脉冲的使用(无论是芳香族-13C 还是脂肪族-13C 自旋)而受到显著影响。该方法应用于人类 S100A1 蛋白 E32Q 突变体的样品中,其分子质量约为 20 kDa。从传统上所需的采样点的约 1.5%获得了高分辨率的 4D 谱。结果表明,较高的分辨率有利于明确分配观察到的脂肪族-芳香族交叉峰。此外,添加脂肪族-13C 维度可以分辨具有简并脂肪族(1)H 化学位移的峰。所有观察到的交叉峰都与 S100A1 蛋白 E32Q 突变体的先前确定的 3D 结构(PDB 2LHL)进行了验证。从提出的高分辨率 4D 13C(ali),13C(aro)-编辑 NOESY 获得的结构约束的增加可靠性可以在蛋白质结构测定的自动化协议中得到利用。