The Skaggs Institute for Chemical Biology and Department of Chemistry and the Worm Institute for Research and Medicine (WIRM), the Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California, 92037, USA.
J Am Chem Soc. 2013 May 29;135(21):7827-30. doi: 10.1021/ja4024989. Epub 2013 May 16.
In enteric bacteria, the kinase LsrK catalyzes the phosphorylation of the C5-hydroxyl group in the linear form of 4,5-dihydroxy-2,3-pentanedione (DPD), the precursor of the type II bacterial quorum sensing molecule (AI-2). This phosphorylation is required for AI-2 sequestration in the cytoplasm and subsequent derepression of AI-2-related genes necessary for quorum development. While LsrK is a critical enzyme within the DPD quorum sensing relay system, kinetic details of this kinase have yet to be reported. A continuous UV-vis spectrophotometric assay was developed that allowed steady-state kinetic analysis of LsrK to be undertaken with the substrates ATP and DPD. The data was most consistent with a rapid equilibrium ordered mechanism with ATP binding first: kcat (7.4 ± 0.6 s(-1)), Km,ATP (150 ± 30 μM) and Km(app),DPD (1.0 ± 0.2 mM). The assay also allowed a DPD substrate profile to be conducted, which provided an unexpected biochemical disconnect between the previous agonist/antagonist cell-based reporter assay and the LsrK assay presented herein. Together these findings raise the importance of LsrK and lay the foundation not only for further understanding of this enzyme and its critical biological role but also for the rational design of regulatory molecules targeting AI-2 quorum sensing in pathogenic bacteria.
在肠道细菌中,激酶 LsrK 催化线性形式的 4,5-二羟基-2,3-戊二酮(DPD)的 C5-羟基的磷酸化,DPD 是 II 型细菌群体感应分子(AI-2)的前体。这种磷酸化对于 AI-2 在细胞质中的隔离以及随后解除与群体感应发育相关的 AI-2 相关基因的阻遏是必需的。虽然 LsrK 是 DPD 群体感应中继系统中的关键酶,但该激酶的动力学细节尚未报道。开发了一种连续的紫外可见分光光度法测定法,该方法允许使用 ATP 和 DPD 底物对 LsrK 进行稳态动力学分析。数据最符合快速平衡有序机制,ATP 首先结合:kcat(7.4 ± 0.6 s(-1)),Km,ATP(150 ± 30 μM)和 Km,app,DPD(1.0 ± 0.2 mM)。该测定法还允许进行 DPD 底物谱分析,这在先前基于细胞的激动剂/拮抗剂报告测定法和本文提出的 LsrK 测定法之间提供了一个意想不到的生化脱节。这些发现共同提高了 LsrK 的重要性,不仅为进一步了解该酶及其关键生物学作用奠定了基础,而且为针对致病性细菌的 AI-2 群体感应的调节分子的合理设计奠定了基础。