Valsecchi Isabel, Guittard-Crilat Emilie, Maldiney Régis, Habricot Yvette, Lignon Sabrina, Lebrun Régine, Miginiac Emile, Ruelland Eric, Jeannette Emmanuelle, Lebreton Sandrine
Université Pierre et Marie Curie, Laboratoire de Physiologie Cellulaire et Moléculaire des Plantes, Unité de Recherche 5 - Equipe d'Accueil 7180 du Centre National de la Recherche Scientifique, case 156, 4 place Jussieu, 75252 Paris cedex 05, France.
Mol Biosyst. 2013 Sep;9(9):2282-95. doi: 10.1039/c3mb70128j.
TCPs are plant specific transcription factors with non-canonical basic helix-loop-helix domains. While Arabidopsis thaliana has 24 TCPs involved in cell proliferation and differentiation, their mode of action has not been fully elucidated. Using bioinformatic tools, we demonstrate that TCP transcription factors belong to the intrinsically disordered proteins (IDP) family and that disorder is higher in class I TCPs than in class II TCPs. In particular, using bioinformatic and biochemical approaches, we have characterized TCP8, a class I TCP. TCP8 exhibits three intrinsically disordered regions (IDR) made of more than 50 consecutive residues, in which phosphorylable Ser residues are mainly clustered. Phosphorylation of Ser-211 that belongs to the central IDR was confirmed by mass spectrometry. Yeast two-hybrid assays also showed that the C-terminal IDR corresponds to a transactivation domain. Moreover, biochemical experiments demonstrated that TCP8 tends to oligomerize in dimers, trimers and higher-order multimers. Bimolecular fluorescence complementation (BiFC) experiments carried out on a truncated form of TCP8 lacking the C-terminal IDR indicated that it is effectively required for the pronounced self-assembly of TCP8. These data were reinforced by the prediction of a coiled coil domain in this IDR. The C-terminal IDR acts thus as an oligomerization domain and also a transactivation domain. Moreover, many Molecular Recognition Features (MoRFs) were predicted, indicating that TCP8 could interact with several partners to fulfill a fine regulation of transcription in response to various stimuli.
TCP蛋白是植物特有的转录因子,具有非典型的碱性螺旋-环-螺旋结构域。拟南芥中有24种TCP蛋白参与细胞增殖和分化,但其作用模式尚未完全阐明。我们利用生物信息学工具证明,TCP转录因子属于内在无序蛋白(IDP)家族,且I类TCP蛋白的无序程度高于II类TCP蛋白。特别是,我们通过生物信息学和生化方法对I类TCP蛋白TCP8进行了表征。TCP8具有三个由50多个连续残基组成的内在无序区域(IDR),其中可磷酸化的丝氨酸残基主要聚集在一起。通过质谱法证实了属于中央IDR的丝氨酸211的磷酸化。酵母双杂交实验还表明,C端IDR对应一个反式激活结构域。此外,生化实验表明,TCP8倾向于以二聚体、三聚体和高阶多聚体的形式寡聚化。对缺乏C端IDR的TCP8截短形式进行的双分子荧光互补(BiFC)实验表明,它对于TCP8明显的自组装是有效必需的。该IDR中卷曲螺旋结构域的预测加强了这些数据。因此,C端IDR作为一个寡聚化结构域,同时也是一个反式激活结构域。此外,预测出许多分子识别特征(MoRF),表明TCP8可以与几个伙伴相互作用,以响应各种刺激对转录进行精细调控。