National Library of Medicine, National Institutes of Health, Lister Hill Center, Cognitive Science Branch, 8600 Rockville Pike, Bethesda, MD 20894, USA.
J Biomed Inform. 2013 Dec;46(6):1099-107. doi: 10.1016/j.jbi.2013.08.005. Epub 2013 Aug 21.
We describe a domain-independent methodology to extend SemRep coverage beyond the biomedical domain. SemRep, a natural language processing application originally designed for biomedical texts, uses the knowledge sources provided by the Unified Medical Language System (UMLS©). Ontological and terminological extensions to the system are needed in order to support other areas of knowledge. We extended SemRep's application by developing a semantic representation of a previously unsupported domain. This was achieved by adapting well-known ontology engineering phases and integrating them with the UMLS knowledge sources on which SemRep crucially depends. While the process to extend SemRep coverage has been successfully applied in earlier projects, this paper presents in detail the step-wise approach we followed and the mechanisms implemented. A case study in the field of medical informatics illustrates how the ontology engineering phases have been adapted for optimal integration with the UMLS. We provide qualitative and quantitative results, which indicate the validity and usefulness of our methodology.
我们描述了一种与领域无关的方法,用于将 SemRep 的覆盖范围扩展到生物医学领域之外。SemRep 是一种最初为生物医学文本设计的自然语言处理应用程序,它使用统一医学语言系统 (UMLS©) 提供的知识源。为了支持其他领域的知识,需要对系统进行本体论和术语学扩展。我们通过为以前不受支持的领域开发语义表示来扩展 SemRep 的应用。这是通过适应著名的本体工程阶段并将其与 SemRep 严重依赖的 UMLS 知识源集成来实现的。虽然扩展 SemRep 覆盖范围的过程已在早期项目中成功应用,但本文详细介绍了我们遵循的逐步方法和实施的机制。医学信息学领域的一个案例研究说明了如何为与 UMLS 的最佳集成而调整本体工程阶段。我们提供定性和定量结果,表明我们的方法的有效性和有用性。