Department of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID 83844, USA.
Microbiology (Reading). 2013 Nov;159(Pt 11):2303-2315. doi: 10.1099/mic.0.068387-0. Epub 2013 Sep 3.
Broad-host-range plasmids play a critical role in the spread of antibiotic resistance and other traits. In spite of increasing information about the genomic diversity of closely related plasmids, the relationship between sequence divergence and host range remains unclear. IncP-1 plasmids are currently classified into six subgroups based on the genetic distance of backbone genes. We investigated whether plasmids from two subgroups exhibit a different host range, using two IncP-1γ plasmids, an IncP-1β plasmid and their minireplicons. Efficiencies of plasmid establishment and maintenance were compared using five species that belong to the Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria. The IncP-1β plasmid replicated and persisted in all five hosts in the absence of selection. Of the two IncP-1γ plasmids, both were unable to replicate in alphaproteobacterial host Sphingobium japonicum, and one established itself in Agrobacterium tumefaciens but was very unstable. In contrast, both IncP-1γ minireplicons, which produced higher levels of replication initiation protein than the wild-type plasmids, replicated in all strains, suggesting that poor establishment of the native plasmids is in part due to suboptimal replication initiation gene regulation. The findings suggest that host ranges of distinct IncP-1 plasmids only partially overlap, which may limit plasmid recombination and thus result in further genome divergence.
广泛宿主范围质粒在抗生素抗性和其他特性的传播中起着关键作用。尽管有关密切相关质粒基因组多样性的信息不断增加,但序列差异与宿主范围之间的关系仍不清楚。IncP-1 质粒目前根据骨干基因的遗传距离分为六个亚组。我们使用两个 IncP-1γ 质粒、一个 IncP-1β 质粒及其小型复制子,研究了来自两个亚组的质粒是否具有不同的宿主范围。使用属于α变形菌、β变形菌和γ变形菌的五个物种比较了质粒建立和维持的效率。在没有选择的情况下,IncP-1β 质粒在所有五个宿主中均能复制和持续存在。在两个 IncP-1γ 质粒中,两个都不能在α变形菌宿主日本根瘤菌中复制,一个在根癌农杆菌中建立,但非常不稳定。相比之下,两个 IncP-1γ 小型复制子都能够在所有菌株中复制,其复制起始蛋白的产生水平高于野生型质粒,这表明天然质粒的建立不良部分是由于复制起始基因调控不理想。研究结果表明,不同 IncP-1 质粒的宿主范围仅部分重叠,这可能限制质粒重组,从而导致进一步的基因组分化。