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人类动脉粥样硬化的系统生物学

Systems biology of human atherosclerosis.

作者信息

Shalhoub Joseph, Sikkel Markus B, Davies Kerry J, Vorkas Panagiotis A, Want Elizabeth J, Davies Alun H

机构信息

1Department of Surgery & Cancer, Academic Section of Vascular Surgery, Imperial College London, United Kingdom.

出版信息

Vasc Endovascular Surg. 2014 Jan;48(1):5-17. doi: 10.1177/1538574413510628. Epub 2013 Nov 7.

Abstract

Systems biology describes a holistic and integrative approach to understand physiology and pathology. The "omic" disciplines include genomics, transcriptomics, proteomics, and metabolic profiling (metabonomics and metabolomics). By adopting a stance, which is opposing (yet complimentary) to conventional research techniques, systems biology offers an overview by assessing the "net" biological effect imposed by a disease or nondisease state. There are a number of different organizational levels to be understood, from DNA to protein, metabolites, cells, organs and organisms, even beyond this to an organism's context. Systems biology relies on the existence of "nodes" and "edges." Nodes are the constituent part of the system being studied (eg, proteins in the proteome), while the edges are the way these constituents interact. In future, it will be increasingly important to collaborate, collating data from multiple studies to improve data sets, making them freely available and undertaking integrative analyses.

摘要

系统生物学描述了一种理解生理学和病理学的整体综合方法。“组学”学科包括基因组学、转录组学、蛋白质组学和代谢谱分析(代谢组学和代谢物组学)。通过采取一种与传统研究技术相对(但互补)的立场,系统生物学通过评估疾病或非疾病状态所施加的“净”生物学效应来提供一个概述。需要理解从DNA到蛋白质、代谢物、细胞、器官和生物体等多个不同的组织层次,甚至超出生物体范围到其所处环境。系统生物学依赖于“节点”和“边”的存在。节点是所研究系统的组成部分(例如蛋白质组中的蛋白质),而边则是这些组成部分相互作用的方式。未来,开展合作、整理来自多项研究的数据以改进数据集、使其免费可用并进行综合分析将变得越来越重要。

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