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在来自总体的样本中,子样本最近共同祖先的后代数量分布。

Within a sample from a population, the distribution of the number of descendants of a subsample's most recent common ancestor.

作者信息

Spouge John L

机构信息

Building 38A, Room 6N603, National Center for Biotechnology Information, Bethesda MD 20894, United States.

出版信息

Theor Popul Biol. 2014 Mar;92:51-4. doi: 10.1016/j.tpb.2013.11.004. Epub 2013 Dec 7.

Abstract

Sample n individuals uniformly at random from a population, and then sample m individuals uniformly at random from the sample. Consider the most recent common ancestor (MRCA) of the subsample of m individuals. Let the subsample MRCA have j descendants in the sample (m ⩽ j ⩽ n). Under a Moran or coalescent model (and therefore under many other models), the probability that j = n is known. In this case, the subsample MRCA is an ancestor of every sampled individual, and the subsample and sample MRCAs are identical. The probability that j = m is also known. In this case, the subsample MRCA is an ancestor of no sampled individual outside the subsample. This article derives the complete distribution of j, enabling inferences from the corresponding p-value. The text presents hypothetical statistical applications pertinent to taxonomy (the gene flow between Neanderthals and anatomically modern humans) and medicine (the association of genetic markers with disease).

摘要

从总体中随机均匀抽取(n)个个体样本,然后从该样本中再随机均匀抽取(m)个个体。考虑这(m)个个体子样本的最近共同祖先(MRCA)。设子样本MRCA在样本中有(j)个后代((m\leq j\leq n))。在莫兰模型或合并模型下(因此在许多其他模型下),(j = n)的概率是已知的。在这种情况下,子样本MRCA是每个抽样个体的祖先,并且子样本和样本的MRCA是相同的。(j = m)的概率也是已知的。在这种情况下,子样本MRCA不是子样本之外任何抽样个体的祖先。本文推导了(j)的完整分布,从而能够从相应的(p)值进行推断。本文还介绍了与分类学(尼安德特人与解剖学上的现代人类之间的基因流动)和医学(基因标记与疾病的关联)相关的假设统计应用。

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本文引用的文献

1
Gene genealogies within a fixed pedigree, and the robustness of Kingman's coalescent.
Genetics. 2012 Apr;190(4):1433-45. doi: 10.1534/genetics.111.135574. Epub 2012 Jan 10.
2
Statistical tests for taxonomic distinctiveness from observations of monophyly.
Evolution. 2007 Feb;61(2):317-23. doi: 10.1111/j.1558-5646.2007.00023.x.
3
THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION.
Genetics. 1964 Apr;49(4):725-38. doi: 10.1093/genetics/49.4.725.
5
A view of Neandertal genetic diversity.
Nat Genet. 2000 Oct;26(2):144-6. doi: 10.1038/79855.
6
Conditional genealogies and the age of a neutral mutant.
Theor Popul Biol. 1999 Oct;56(2):183-201. doi: 10.1006/tpbi.1998.1411.
7
X chromosome evidence for ancient human histories.
Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):3320-4. doi: 10.1073/pnas.96.6.3320.
8
On the probability of Neanderthal ancestry.
Am J Hum Genet. 1998 Oct;63(4):1237-40. doi: 10.1086/302052.
9
Neandertal DNA sequences and the origin of modern humans.
Cell. 1997 Jul 11;90(1):19-30. doi: 10.1016/s0092-8674(00)80310-4.

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