Department of NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry , Am Fassberg 11, 37077 Göttingen, Germany.
J Am Chem Soc. 2013 Dec 26;135(51):19135-8. doi: 10.1021/ja411362q. Epub 2013 Dec 17.
Noncovalent supramolecular assemblies possess in general several unique subunit-subunit interfaces.The basic building block of such an assembly consists of several subunits and contains all unique interfaces. Atomic-resolution structures of monomeric subunits are typically accessed by crystallography or solution NMR and fitted into electron microscopy density maps. However, the structure of the intact building block in the assembled state remains unknown with this hybrid approach. Here, we present the solid-state NMR atomic structure of the building block of the type III secretion system needle. The building block structure consists of a homotetrameric subunit complex with three unique supramolecular interfaces. Side-chain positions at the interfaces were solved at atomic detail. The high-resolution structure reveals unambiguously the helical handedness of the assembly, determined to be right-handed for the type III secretion system needle.Additionally, the axial rise per subunit could be extracted from the tetramer structure and independently validated by mass-per-length measurements.
非共价超分子组装体通常具有几个独特的亚基-亚基界面。这样的组装体的基本构建块由几个亚基组成,并包含所有独特的界面。单体亚基的原子分辨率结构通常通过晶体学或溶液 NMR 获得,并拟合到电子显微镜密度图中。然而,通过这种混合方法,组装状态下完整构建块的结构仍然未知。在这里,我们展示了 III 型分泌系统针的构建块的固态 NMR 原子结构。构建块结构由具有三个独特超分子界面的四聚体亚基复合物组成。界面处的侧链位置以原子细节解决。高分辨率结构明确揭示了组装的螺旋手性,确定 III 型分泌系统针的螺旋手性为右手性。此外,从四聚体结构中可以提取每个亚基的轴向上升,并通过质量-长度测量独立验证。