Bi Changlong, Li Bo, Du Lili, Wang Lishan, Zhang Yingqi, Cheng Zhifeng, Zhai Aixia
Department of Endocrinology, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
FengHe (ShangHai) Information Technology Co., Ltd., Shanghai, China ; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai ,China.
PLoS One. 2013 Dec 20;8(12):e82309. doi: 10.1371/journal.pone.0082309. eCollection 2013.
To explore the endocrine mechanisms of aldosterone-producing adenoma (APA) by using the microarray expression profiles of normal and APA samples.
The gene expression profile GSE8514 was downloaded from Gene Expression Omnibus database, including samples from normal adrenals (n = 5) and APAs (n = 10). The differentially expressed genes (DEGs) were identified by samr package and endocrine DEGs were obtained according to Clinical Genome Database. Then, functional enrichment analysis of screened DEGs was performed by DAVID (Database for Annotation, Visualization and Integrated Discovery). Finally, a regulatory network was constructed to screen endocrine genes related with adrenal dysfunction and pathway enrichment analysis for the constructed network was performed.
A total of 2149 DEGs were identified including 379 up- and 1770 down-regulated genes. And 26 endocrine genes were filtered from the DEGs. Furthermore, the down-regulated DEGs are mainly related to protein kinase cascade, response to molecule of bacterial origin, response to lipopolysaccharide, cellular macromolecule catabolic process and macromolecule catabolic process, while the up-regulated DEGs are related with regulation of ion transport. The target genes of VDR (vitamin D receptor), one of the three endocrine genes differentially expressed in the regulatory network, were endocrine genes including CYP24A1 (25-hydroxyvitamin D-24-hydroxylase) and PTH (parathyroid hormone). Three pathways may be associated with APA pathogenesis including cytokine-cytokine receptor interaction, pathways in cancer and autoimmune thyroid disease.
The VDR is the most significant transcription factor and related endocrine genes might play important roles in the endocrine mechanisms of APA.
通过使用正常样本和醛固酮瘤(APA)样本的基因芯片表达谱来探索醛固酮瘤的内分泌机制。
从基因表达综合数据库下载基因表达谱GSE8514,包括正常肾上腺样本(n = 5)和醛固酮瘤样本(n = 10)。使用samr软件包鉴定差异表达基因(DEGs),并根据临床基因组数据库获得内分泌DEGs。然后,通过DAVID(注释、可视化和综合发现数据库)对筛选出的DEGs进行功能富集分析。最后,构建调控网络以筛选与肾上腺功能障碍相关的内分泌基因,并对构建的网络进行通路富集分析。
共鉴定出2149个DEGs,其中包括379个上调基因和1770个下调基因。从这些DEGs中筛选出26个内分泌基因。此外,下调的DEGs主要与蛋白激酶级联反应、对细菌来源分子的反应、对脂多糖的反应、细胞大分子分解代谢过程和大分子分解代谢过程有关,而上调的DEGs与离子转运调节有关。调控网络中差异表达的三个内分泌基因之一维生素D受体(VDR)的靶基因是包括CYP24A1(25-羟维生素D-24-羟化酶)和甲状旁腺激素(PTH)在内的内分泌基因。三个通路可能与醛固酮瘤的发病机制有关,包括细胞因子-细胞因子受体相互作用、癌症通路和自身免疫性甲状腺疾病。
VDR是最显著的转录因子,相关内分泌基因可能在醛固酮瘤的内分泌机制中发挥重要作用。