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大肠杆菌趋化性适应的不精确性。

Imprecision of adaptation in Escherichia coli chemotaxis.

机构信息

Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), DKFZ-ZMBH Alliance, University of Heidelberg, Heidelberg, Baden-Württemberg, Germany.

Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America.

出版信息

PLoS One. 2014 Jan 8;9(1):e84904. doi: 10.1371/journal.pone.0084904. eCollection 2014.

Abstract

Adaptability is an essential property of many sensory systems, enabling maintenance of a sensitive response over a range of background stimulus levels. In bacterial chemotaxis, adaptation to the preset level of pathway activity is achieved through an integral feedback mechanism based on activity-dependent methylation of chemoreceptors. It has been argued that this architecture ensures precise and robust adaptation regardless of the ambient ligand concentration, making perfect adaptation a celebrated property of the chemotaxis system. However, possible deviations from such ideal adaptive behavior and its consequences for chemotaxis have not been explored in detail. Here we show that the chemotaxis pathway in Escherichia coli shows increasingly imprecise adaptation to higher concentrations of attractants, with a clear correlation between the time of adaptation to a step-like stimulus and the extent of imprecision. Our analysis suggests that this imprecision results from a gradual saturation of receptor methylation sites at high levels of stimulation, which prevents full recovery of the pathway activity by violating the conditions required for precise adaptation. We further use computer simulations to show that limited imprecision of adaptation has little effect on the rate of chemotactic drift of a bacterial population in gradients, but hinders precise accumulation at the peak of the gradient. Finally, we show that for two major chemoeffectors, serine and cysteine, failure of adaptation at concentrations above 1 mM might prevent bacteria from accumulating at toxic concentrations of these amino acids.

摘要

适应能力是许多感觉系统的重要特性,使它们能够在一系列背景刺激水平下保持敏感的反应。在细菌趋化性中,通过基于化学感受器活性依赖性甲基化的积分反馈机制,实现了对预设途径活性水平的适应。有人认为,这种结构确保了精确和稳健的适应,无论环境配体浓度如何,使完美的适应成为趋化系统的一个著名特性。然而,这种理想的自适应行为可能存在偏差,以及它对趋化性的影响,尚未得到详细探讨。在这里,我们表明大肠杆菌中的趋化途径对较高浓度的趋化剂表现出越来越不精确的适应,与适应阶跃刺激的时间和不精确的程度之间存在明显的相关性。我们的分析表明,这种不精确性是由于在高刺激水平下受体甲基化位点逐渐饱和,通过违反精确适应所需的条件,阻止了途径活性的完全恢复。我们进一步使用计算机模拟表明,适应的有限不精确性对细菌群体在梯度中的趋化漂移率几乎没有影响,但会阻碍在梯度峰处的精确积累。最后,我们表明,对于两种主要的化学感受器,丝氨酸和半胱氨酸,在浓度高于 1mM 时的适应失败可能会阻止细菌在这些氨基酸的毒性浓度下积累。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/baf2/3885661/4229403732a2/pone.0084904.g001.jpg

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