Laboratory of Biochemistry, Faculty of Food Technology and Biotechnology, University of Zagreb, Zagreb 10000, Croatia and Molecular Biology, Adolf-Butenandt-Institut, University of Munich, Munich 80336, Germany.
Nucleic Acids Res. 2014 Apr;42(7):4270-82. doi: 10.1093/nar/gkt1395. Epub 2014 Jan 24.
Although yeast PHO5 promoter chromatin opening is a founding model for chromatin remodeling, the complete set of involved remodelers remained unknown for a long time. The SWI/SNF and INO80 remodelers cooperate here, but nonessentially, and none of the many tested single or combined remodeler gene mutations could prevent PHO5 promoter opening. RSC, the most abundant and only remodeler essential for viability, was a controversial candidate for the unrecognized remodeling activity but unassessed in vivo. Now we show that remodels the structure of chromatin (RSC) is crucially involved in PHO5 promoter opening. Further, the isw1 chd1 double deletion also delayed chromatin remodeling. Strikingly, combined absence of RSC and Isw1/Chd1 or Snf2 abolished for the first time promoter opening on otherwise sufficient induction in vivo. Together with previous findings, we recognize now a surprisingly complex network of five remodelers (RSC, SWI/SNF, INO80, Isw1 and Chd1) from four subfamilies (SWI/SNF, INO80, ISWI and CHD) as involved in PHO5 promoter chromatin remodeling. This is likely the first described complete remodeler set for a physiological chromatin transition. RSC was hardly involved at the coregulated PHO8 or PHO84 promoters despite cofactor recruitment by the same transactivator and RSC's presence at all three promoters. Therefore, promoter-specific chromatin rather than transactivators determine remodeler requirements.
尽管酵母 PHO5 启动子染色质开放性是染色质重塑的基础模型,但很长一段时间以来,涉及的完整重塑因子仍未被发现。SWI/SNF 和 INO80 重塑因子在这里合作,但不是必需的,而且许多经过测试的单个或组合重塑因子基因突变都不能阻止 PHO5 启动子的开放。RSC 是最丰富的、唯一对生存至关重要的重塑因子,它是未被识别的重塑活性的有争议的候选者,但在体内未被评估。现在我们表明,重塑染色质结构(RSC)对于 PHO5 启动子的开放至关重要。此外,isw1 chd1 双缺失也会延迟染色质重塑。引人注目的是,RSC 和 Isw1/Chd1 或 Snf2 的组合缺失首次完全消除了体内足够诱导时启动子的开放。结合以前的发现,我们现在认识到,来自四个亚家族(SWI/SNF、INO80、ISWI 和 CHD)的五个重塑因子(RSC、SWI/SNF、INO80、Isw1 和 Chd1)组成了一个令人惊讶的复杂网络,参与 PHO5 启动子染色质重塑。这可能是第一个描述的完整的生理染色质转换重塑因子集。尽管相同的转录激活因子募集了共激活因子,并且 RSC 存在于所有三个启动子上,但 RSC 在核心调控的 PHO8 或 PHO84 启动子中几乎没有参与。因此,启动子特异性染色质而不是转录激活因子决定了重塑因子的需求。