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一种用于抑制单轴电子断层扫描重建中缺失楔形射线伪影的简单傅里叶滤波器。

A simple Fourier filter for suppression of the missing wedge ray artefacts in single-axis electron tomographic reconstructions.

作者信息

Kováčik Lubomír, Kereïche Sami, Kerïeche Sami, Höög Johanna L, Jůda Pavel, Matula Pavel, Raška Ivan

机构信息

Charles University in Prague, First Faculty of Medicine, Institute of Cellular Biology and Pathology, Albertov 4, 128 01 Prague 2, Czech Republic.

Charles University in Prague, First Faculty of Medicine, Institute of Cellular Biology and Pathology, Albertov 4, 128 01 Prague 2, Czech Republic.

出版信息

J Struct Biol. 2014 Apr;186(1):141-52. doi: 10.1016/j.jsb.2014.02.004. Epub 2014 Feb 17.

Abstract

The limited specimen tilting range that is typically available in electron tomography gives rise to a region in the Fourier space of the reconstructed object where experimental data are unavailable - the missing wedge. Since this region is sharply delimited from the area of available data, the reconstructed signal is typically hampered by convolution with its impulse response, which gives rise to the well-known missing wedge artefacts in 3D reconstructions. Despite the recent progress in the field of reconstruction and regularization techniques, the missing wedge artefacts remain untreated in most current reconstruction workflows in structural biology. Therefore we have designed a simple Fourier angular filter that effectively suppresses the ray artefacts in the single-axis tilting projection acquisition scheme, making single-axis tomographic reconstructions easier to interpret in particular at low signal-to-noise ratio in acquired projections. The proposed filter can be easily incorporated into current electron tomographic reconstruction schemes.

摘要

电子断层扫描中通常可用的有限样本倾斜范围会在重建对象的傅里叶空间中产生一个实验数据不可用的区域——缺失楔形。由于该区域与可用数据区域有明显界限,重建信号通常会受到与其脉冲响应的卷积的阻碍,这在三维重建中会产生众所周知的缺失楔形伪影。尽管在重建和正则化技术领域最近取得了进展,但在结构生物学的大多数当前重建工作流程中,缺失楔形伪影仍未得到处理。因此,我们设计了一种简单的傅里叶角滤波器,它能有效抑制单轴倾斜投影采集方案中的射线伪影,使得单轴断层扫描重建在特别是采集投影中信噪比低时更易于解释。所提出的滤波器可以很容易地纳入当前的电子断层扫描重建方案中。

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