Gelman Hannah, Gruebele Martin
Departments of Physics, Chemistry, and Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.
Q Rev Biophys. 2014 May;47(2):95-142. doi: 10.1017/S003358351400002X. Epub 2014 Mar 18.
Fast-folding proteins have been a major focus of computational and experimental study because they are accessible to both techniques: they are small and fast enough to be reasonably simulated with current computational power, but have dynamics slow enough to be observed with specially developed experimental techniques. This coupled study of fast-folding proteins has provided insight into the mechanisms, which allow some proteins to find their native conformation well <1 ms and has uncovered examples of theoretically predicted phenomena such as downhill folding. The study of fast folders also informs our understanding of even 'slow' folding processes: fast folders are small; relatively simple protein domains and the principles that govern their folding also govern the folding of more complex systems. This review summarizes the major theoretical and experimental techniques used to study fast-folding proteins and provides an overview of the major findings of fast-folding research. Finally, we examine the themes that have emerged from studying fast folders and briefly summarize their application to protein folding in general, as well as some work that is left to do.
快速折叠蛋白一直是计算研究和实验研究的主要焦点,因为这两种技术都适用于它们:它们体积小且折叠速度快,凭借当前的计算能力能够进行合理模拟,但动力学速度又足够慢,可用专门开发的实验技术进行观测。对快速折叠蛋白的这种联合研究深入了解了其机制,这些机制使一些蛋白能在不到1毫秒的时间内找到其天然构象,还发现了诸如下坡折叠等理论预测现象的实例。对快速折叠蛋白的研究也增进了我们对甚至“缓慢”折叠过程的理解:快速折叠蛋白体积小,是相对简单的蛋白质结构域,支配其折叠的原理同样也支配更复杂系统的折叠。本综述总结了用于研究快速折叠蛋白的主要理论和实验技术,并概述了快速折叠研究的主要发现。最后,我们审视了研究快速折叠蛋白过程中出现的主题,并简要总结它们在一般蛋白质折叠中的应用,以及一些有待开展的工作。