产病毒囊泡的嗜热古菌海栖热球菌30-1的基因组序列
Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles.
作者信息
Oberto Jacques, Gaudin Marie, Cossu Matteo, Gorlas Aurore, Slesarev Alexeï, Marguet Evelyne, Forterre Patrick
机构信息
Université Paris-Sud, CNRS, UMR8621, Institut de Génétique et Microbiologie, Orsay, France.
出版信息
Genome Announc. 2014 Mar 27;2(2):e00243-14. doi: 10.1128/genomeA.00243-14.
Abstract
Thermococcus nautili 30-1 (formerly Thermococcus nautilus), an anaerobic hyperthermophilic marine archaeon, was isolated in 1999 from a deep-sea hydrothermal vent during the Amistad campaign. Here, we present the complete sequence of T. nautili, which is able to produce membrane vesicles containing plasmid DNA. This property makes T. nautili a model organism to study horizontal gene transfer.
摘要
鹦鹉螺嗜热栖热菌30-1（以前称为鹦鹉螺嗜热栖热菌）是一种厌氧超嗜热海洋古菌，于1999年在阿密斯塔德考察期间从深海热液喷口中分离出来。在此，我们展示了鹦鹉螺嗜热栖热菌的完整序列，它能够产生含有质粒DNA的膜泡。这一特性使鹦鹉螺嗜热栖热菌成为研究水平基因转移的模式生物。
相似文献
1
Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles.产病毒囊泡的嗜热古菌海栖热球菌30-1的基因组序列
Genome Announc. 2014 Mar 27;2(2):e00243-14. doi: 10.1128/genomeA.00243-14.
2
Thermococcus nautili sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal deep-sea vent.耐高热古菌属，一种从深海热液喷口分离出的高温古菌。
Int J Syst Evol Microbiol. 2014 May;64(Pt 5):1802-1810. doi: 10.1099/ijs.0.060376-0. Epub 2014 Feb 20.
3
Complete genome sequence of Thermococcus sp. strain 4557, a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area.一株深海热液喷口区高温古菌 Thermococcus sp. 4557 的全基因组序列
J Bacteriol. 2011 Oct;193(19):5544-5. doi: 10.1128/JB.05851-11.
4
Draft genome sequence of Thermococcus sp. EP1, a novel hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent on the East Pacific Rise.嗜热栖热菌属EP1的基因组序列草图，EP1是从东太平洋海隆深海热液喷口分离出的一种新型嗜热古菌。
Mar Genomics. 2016 Apr;26:9-11. doi: 10.1016/j.margen.2015.11.014. Epub 2015 Dec 7.
5
Complete genome sequence of Thermococcus eurythermalis A501, a conditional piezophilic hyperthermophilic archaeon with a wide temperature range, isolated from an oil-immersed deep-sea hydrothermal chimney on Guaymas Basin.嗜热栖热球菌A501的全基因组序列，这是一种具有广泛温度范围的条件性嗜压嗜热古菌，从瓜伊马斯盆地的油浸深海热液烟囱中分离得到。
J Biotechnol. 2015 Jan 10;193:14-5. doi: 10.1016/j.jbiotec.2014.11.006. Epub 2014 Nov 14.
6
Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP.嗜热、嗜压、异养和产羧基微生物古菌Thermococcus barophilus MP 的全基因组序列。
J Bacteriol. 2011 Mar;193(6):1481-2. doi: 10.1128/JB.01490-10. Epub 2011 Jan 7.
7
Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.嗜热古菌 Thermococcus sp. 株 CL1 的全基因组序列，该菌从采自热液喷口的多毛环节动物 Paralvinella sp. 体内分离得到。
J Bacteriol. 2012 Sep;194(17):4769-70. doi: 10.1128/JB.01016-12.
8
Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise.嗜压热球菌新种，一种新型嗜热嗜压古菌，生长压力范围广，从开曼海隆最深处的热液喷口分离得到。
Syst Appl Microbiol. 2016 Oct;39(7):440-444. doi: 10.1016/j.syapm.2016.08.003. Epub 2016 Aug 26.
9
sp. nov., a hyperthermophilic and piezophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Atlantic Ridge.sp. nov.，一种中大西洋海脊深海热液喷口分离的高温、高压古菌。
Int J Syst Evol Microbiol. 2021 Jul;71(7). doi: 10.1099/ijsem.0.004853.
10
Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.嗜热古菌 Thermococcus sp. ES1 的全基因组序列。
J Biotechnol. 2014 Mar 20;174:14-5. doi: 10.1016/j.jbiotec.2014.01.022. Epub 2014 Jan 25.
引用本文的文献
1
Archaeal tyrosine recombinases.古菌酪氨酸重组酶。
FEMS Microbiol Rev. 2021 Aug 17;45(4). doi: 10.1093/femsre/fuab004.
2
Structural studies of geranylgeranylglyceryl phosphate synthase, a prenyltransferase found in thermophilic Euryarchaeota.热泉古菌中发现的香叶基香叶基甘油磷酸合酶的结构研究，一种 prenyltransferase。
Acta Crystallogr D Struct Biol. 2020 Jun 1;76(Pt 6):542-557. doi: 10.1107/S2059798320004878. Epub 2020 May 29.
3
Pervasive Suicidal Integrases in Deep-Sea Archaea.深海古菌中普遍存在的自杀整合酶。
Mol Biol Evol. 2020 Jun 1;37(6):1727-1743. doi: 10.1093/molbev/msaa041.
4
Archaeal NSUN6 catalyzes m5C72 modification on a wide-range of specific tRNAs.古菌 NSUN6 催化广泛的特定 tRNA 上的 m5C72 修饰。
Nucleic Acids Res. 2019 Feb 28;47(4):2041-2055. doi: 10.1093/nar/gky1236.
5
Increase of positive supercoiling in a hyperthermophilic archaeon after UV irradiation.紫外线照射后嗜热古菌中正超螺旋的增加。
Extremophiles. 2019 Jan;23(1):141-149. doi: 10.1007/s00792-018-1068-x. Epub 2018 Nov 22.
6
Complete Genome Sequence of Hyperthermophilic Archaeon sp. EXT12c, Isolated from the East Pacific Rise 9°N.从东太平洋海隆9°N分离出的嗜热古菌EXT12c的全基因组序列
Genome Announc. 2017 Dec 14;5(50):e01385-17. doi: 10.1128/genomeA.01385-17.
7
Flipping chromosomes in deep-sea archaea.深海古菌中的染色体翻转
PLoS Genet. 2017 Jun 19;13(6):e1006847. doi: 10.1371/journal.pgen.1006847. eCollection 2017 Jun.
8
Sulfur vesicles from Thermococcales: A possible role in sulfur detoxifying mechanisms.来自热球菌纲的硫小泡：在硫解毒机制中的可能作用。
Biochimie. 2015 Nov;118:356-64. doi: 10.1016/j.biochi.2015.07.026. Epub 2015 Jul 30.
9
Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes.比较基因组学揭示了高度重排的热球菌目染色体中必需基因组簇的保守定位。
Biochimie. 2015 Nov;118:313-21. doi: 10.1016/j.biochi.2015.07.008. Epub 2015 Jul 10.
本文引用的文献
1
Thermococcus nautili sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal deep-sea vent.耐高热古菌属，一种从深海热液喷口分离出的高温古菌。
Int J Syst Evol Microbiol. 2014 May;64(Pt 5):1802-1810. doi: 10.1099/ijs.0.060376-0. Epub 2014 Feb 20.
2
A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2.来自嗜热栖热球菌质粒pTN2的一种高度分化的古真核生物引发酶。
Nucleic Acids Res. 2014 Apr;42(6):3707-19. doi: 10.1093/nar/gkt1385. Epub 2014 Jan 20.
3
Genetic techniques for the archaea.古菌的遗传技术。
Annu Rev Genet. 2013;47:539-61. doi: 10.1146/annurev-genet-111212-133225. Epub 2013 Sep 18.
4
Extracellular membrane vesicles harbouring viral genomes.携带病毒基因组的细胞外膜囊泡。
Environ Microbiol. 2014 Apr;16(4):1167-75. doi: 10.1111/1462-2920.12235. Epub 2013 Aug 27.
5
Consed: a graphical editor for next-generation sequencing.Consed：下一代测序的图形编辑器。
Bioinformatics. 2013 Nov 15;29(22):2936-7. doi: 10.1093/bioinformatics/btt515. Epub 2013 Aug 31.
6
Hyperthermophilic archaea produce membrane vesicles that can transfer DNA.嗜热古菌产生的膜泡可以转移 DNA。
Environ Microbiol Rep. 2013 Feb;5(1):109-16. doi: 10.1111/j.1758-2229.2012.00348.x. Epub 2012 May 7.
7
Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1.与病毒共存：从 Thermococcus prieurii 中鉴定出两种新型质粒，该菌是纺锤形病毒 TPV1 的宿主。
Appl Environ Microbiol. 2013 Jun;79(12):3822-8. doi: 10.1128/AEM.00525-13. Epub 2013 Apr 12.
8
Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids.从五个新的 Thermococcus 质体中了解嗜热环境中移动遗传元件的动态。
PLoS One. 2013;8(1):e49044. doi: 10.1371/journal.pone.0049044. Epub 2013 Jan 11.
9
Plasmids, viruses and virus-like membrane vesicles from Thermococcales.热球菌科的质粒、病毒和类病毒膜囊泡。
Biochem Soc Trans. 2011 Jan;39(1):36-44. doi: 10.1042/BST0390036.
10
Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP.嗜热、嗜压、异养和产羧基微生物古菌Thermococcus barophilus MP 的全基因组序列。
J Bacteriol. 2011 Mar;193(6):1481-2. doi: 10.1128/JB.01490-10. Epub 2011 Jan 7.
Zotero 插件