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丰富的化石记录为茜草科(唇形目)提供了校准的系统发育,并为洲际离散的时间和方向性的显著偏差提供了证据。

A rich fossil record yields calibrated phylogeny for Acanthaceae (Lamiales) and evidence for marked biases in timing and directionality of intercontinental disjunctions.

机构信息

Department of Ecology and Evolutionary Biology and Museum of Natural History, University of Colorado, UCB 350, Boulder, CO 80309, USA

Rancho Santa Ana Botanic Garden, 1500 N. College Avenue, Claremont, CA 91711, USA.

出版信息

Syst Biol. 2014 Sep;63(5):660-84. doi: 10.1093/sysbio/syu029. Epub 2014 Apr 14.

Abstract

More than a decade of phylogenetic research has yielded a well-sampled, strongly supported hypothesis of relationships within the large ( > 4000 species) plant family Acanthaceae. This hypothesis points to intriguing biogeographic patterns and asymmetries in sister clade diversity but, absent a time-calibrated estimate for this evolutionary history, these patterns have remained unexplored. Here, we reconstruct divergence times within Acanthaceae using fossils as calibration points and experimenting with both fossil selection and effects of invoking a maximum age prior related to the origin of Eudicots. Contrary to earlier reports of a paucity of fossils of Lamiales (an order of ∼ 23,000 species that includes Acanthaceae) and to the expectation that a largely herbaceous to soft-wooded and tropical lineage would have few fossils, we recovered 51 reports of fossil Acanthaceae. Rigorous evaluation of these for accurate identification, quality of age assessment and utility in dating yielded eight fossils judged to merit inclusion in analyses. With nearly 10 kb of DNA sequence data, we used two sets of fossils as constraints to reconstruct divergence times. We demonstrate differences in age estimates depending on fossil selection and that enforcement of maximum age priors substantially alters estimated clade ages, especially in analyses that utilize a smaller rather than larger set of fossils. Our results suggest that long-distance dispersal events explain present-day distributions better than do Gondwanan or northern land bridge hypotheses. This biogeographical conclusion is for the most part robust to alternative calibration schemes. Our data support a minimum of 13 Old World (OW) to New World (NW) dispersal events but, intriguingly, only one in the reverse direction. Eleven of these 13 were among Acanthaceae s.s., which comprises > 90% of species diversity in the family. Remarkably, if minimum age estimates approximate true history, these 11 events occurred within the last ∼ 20 myr even though Acanthaceae s.s is over 3 times as old. A simulation study confirmed that these dispersal events were significantly skewed toward the present and not simply a chance occurrence. Finally, we review reports of fossils that have been assigned to Acanthaceae that are substantially older than the lower Cretaceous estimate for Angiosperms as a whole (i.e., the general consensus that has resulted from several recent dating and fossil-based studies in plants). This is the first study to reconstruct divergence times among clades of Acanthaceae and sets the stage for comparative evolutionary research in this and related families that have until now been thought to have extremely poor fossil resources.

摘要

经过十多年的系统发育研究,人们对大(超过 4000 种)植物科玄参科内的关系提出了一个经过充分采样、得到有力支持的假说。这一假说指出了有趣的生物地理模式和姊妹群多样性的不对称性,但由于缺乏对这一进化历史的时间校准估计,这些模式仍未得到探索。在这里,我们使用化石作为校准点来重建玄参科内的分歧时间,并尝试了化石选择和调用与真双子叶植物起源相关的最大年龄先验的影响。与 earlier 报告的玄参科 Lamiales(一个约有 23000 个物种的目,包括玄参科)化石稀少的情况相反,并且与主要是草本到软木和热带谱系化石稀少的预期相反,我们恢复了 51 份玄参科化石的报告。我们对这些化石进行了严格的评估,以确定其准确的鉴定、年龄评估的质量和在定年中的用途,结果有 8 个化石被认为值得纳入分析。有了近 10 kb 的 DNA 序列数据,我们使用两组化石作为约束来重建分歧时间。我们证明了化石选择的年龄估计值存在差异,并且强制执行最大年龄先验值会大大改变估计的分支年龄,特别是在使用较小而非较大的化石集进行分析的情况下。我们的结果表明,长距离扩散事件比冈瓦纳或北方陆桥假说更能解释现今的分布。这种生物地理学结论在很大程度上是稳健的,不受替代校准方案的影响。我们的数据支持至少有 13 次从旧世界(OW)到新世界(NW)的扩散事件,但有趣的是,只有一次是相反的方向。这 13 次中有 11 次发生在玄参科 s.s.中,而玄参科 s.s.包含了该科 90%以上的物种多样性。值得注意的是,如果最小年龄估计值接近真实历史,那么这 11 次事件发生在最近的 ∼2000 万年,尽管玄参科 s.s.的历史要长得多。一项模拟研究证实,这些扩散事件明显偏向于现在,而不仅仅是偶然发生的。最后,我们回顾了一些被认为是玄参科化石的报告,这些化石的年龄远超过整个被子植物的白垩纪下限(即,这是最近几次植物定年和基于化石的研究得出的共识)。这是第一个重建玄参科内各分支分歧时间的研究,为在该科和相关科进行比较进化研究奠定了基础,这些科以前被认为化石资源极其匮乏。

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