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通过秀丽隐杆线虫胚胎的微分干涉差(DIC)电影对有丝分裂纺锤体定位进行自动化高通量定量分析。

Automated high-throughput quantification of mitotic spindle positioning from DIC movies of Caenorhabditis embryos.

作者信息

Cluet David, Stébé Pierre-Nicolas, Riche Soizic, Spichty Martin, Delattre Marie

机构信息

Laboratory of Molecular Biology of the Cell, Ecole Normale Supérieure de Lyon, Centre National de la Recherche Scientifique, Lyon, France.

出版信息

PLoS One. 2014 Apr 24;9(4):e93718. doi: 10.1371/journal.pone.0093718. eCollection 2014.

Abstract

The mitotic spindle is a microtubule-based structure that elongates to accurately segregate chromosomes during anaphase. Its position within the cell also dictates the future cell cleavage plan, thereby determining daughter cell orientation within a tissue or cell fate adoption for polarized cells. Therefore, the mitotic spindle ensures at the same time proper cell division and developmental precision. Consequently, spindle dynamics is the matter of intensive research. Among the different cellular models that have been explored, the one-cell stage C. elegans embryo has been an essential and powerful system to dissect the molecular and biophysical basis of spindle elongation and positioning. Indeed, in this large and transparent cell, spindle poles (or centrosomes) can be easily detected from simple DIC microscopy by human eyes. To perform quantitative and high-throughput analysis of spindle motion, we developed a computer program ACT for Automated-Centrosome-Tracking from DIC movies of C. elegans embryos. We therefore offer an alternative to the image acquisition and processing of transgenic lines expressing fluorescent spindle markers. Consequently, experiments on large sets of cells can be performed with a simple setup using inexpensive microscopes. Moreover, analysis of any mutant or wild-type backgrounds is accessible because laborious rounds of crosses with transgenic lines become unnecessary. Last, our program allows spindle detection in other nematode species, offering the same quality of DIC images but for which techniques of transgenesis are not accessible. Thus, our program also opens the way towards a quantitative evolutionary approach of spindle dynamics. Overall, our computer program is a unique macro for the image- and movie-processing platform ImageJ. It is user-friendly and freely available under an open-source licence. ACT allows batch-wise analysis of large sets of mitosis events. Within 2 minutes, a single movie is processed and the accuracy of the automated tracking matches the precision of the human eye.

摘要

有丝分裂纺锤体是一种基于微管的结构,在后期会伸长以精确分离染色体。它在细胞内的位置还决定了未来的细胞分裂计划,从而决定了组织内子细胞的方向或极化细胞的细胞命运。因此,有丝分裂纺锤体同时确保了正确的细胞分裂和发育精度。因此,纺锤体动力学是深入研究的课题。在已探索的不同细胞模型中,单细胞阶段的秀丽隐杆线虫胚胎是剖析纺锤体伸长和定位的分子及生物物理基础的重要且强大的系统。事实上,在这个大而透明的细胞中,通过简单的微分干涉差显微镜(DIC),人眼就能轻松检测到纺锤体极(或中心体)。为了对纺锤体运动进行定量和高通量分析,我们开发了一个名为ACT的计算机程序,用于从秀丽隐杆线虫胚胎的DIC电影中自动跟踪中心体。因此,我们提供了一种替代方法,无需对表达荧光纺锤体标记的转基因品系进行图像采集和处理。因此,使用廉价显微镜通过简单设置就可以对大量细胞进行实验。此外,由于无需与转基因品系进行繁琐的杂交,所以可以对任何突变体或野生型背景进行分析。最后,我们的程序允许在其他线虫物种中检测纺锤体,这些物种能提供相同质量的DIC图像,但无法进行转基因技术操作。因此,我们的程序也为纺锤体动力学的定量进化方法开辟了道路。总体而言,我们的计算机程序是图像和电影处理平台ImageJ的一个独特宏。它用户友好,在开源许可下免费提供。ACT允许对大量有丝分裂事件进行批量分析。在2分钟内就能处理一部电影,自动跟踪的准确性与人眼的精度相当。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eacf/3998942/e897d21ae4a8/pone.0093718.g001.jpg

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