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哺乳动物细胞中的CRISPR转录抑制装置及分层回路

CRISPR transcriptional repression devices and layered circuits in mammalian cells.

作者信息

Kiani Samira, Beal Jacob, Ebrahimkhani Mohammad R, Huh Jin, Hall Richard N, Xie Zhen, Li Yinqing, Weiss Ron

机构信息

1] Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA. [2] Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

Raytheon BBN Technologies, Cambridge, Massachusetts, USA.

出版信息

Nat Methods. 2014 Jul;11(7):723-6. doi: 10.1038/nmeth.2969. Epub 2014 May 5.

Abstract

A key obstacle to creating sophisticated genetic circuits has been the lack of scalable device libraries. Here we present a modular transcriptional repression architecture based on clustered regularly interspaced palindromic repeats (CRISPR) system and examine approaches for regulated expression of guide RNAs in human cells. Subsequently we demonstrate that CRISPR regulatory devices can be layered to create functional cascaded circuits, which provide a valuable toolbox for engineering purposes.

摘要

构建复杂基因电路的一个关键障碍是缺乏可扩展的器件库。在此,我们提出了一种基于成簇规律间隔短回文重复序列(CRISPR)系统的模块化转录抑制架构,并研究了在人类细胞中调控导向RNA表达的方法。随后,我们证明CRISPR调控器件可以分层构建功能性级联电路,这为工程应用提供了一个有价值的工具箱。

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本文引用的文献

1
Modular composition of gene transcription networks.
PLoS Comput Biol. 2014 Mar 13;10(3):e1003486. doi: 10.1371/journal.pcbi.1003486. eCollection 2014 Mar.
2
Genomic mining of prokaryotic repressors for orthogonal logic gates.
Nat Chem Biol. 2014 Feb;10(2):99-105. doi: 10.1038/nchembio.1411. Epub 2013 Dec 8.
3
Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression.
Curr Opin Chem Biol. 2013 Dec;17(6):878-92. doi: 10.1016/j.cbpa.2013.10.003. Epub 2013 Nov 19.
4
Orthogonal Cas9 proteins for RNA-guided gene regulation and editing.
Nat Methods. 2013 Nov;10(11):1116-21. doi: 10.1038/nmeth.2681. Epub 2013 Sep 29.
5
Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas.
ACS Synth Biol. 2013 Oct 18;2(10):604-13. doi: 10.1021/sb400081r. Epub 2013 Sep 11.
6
High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells.
Nat Biotechnol. 2013 Sep;31(9):822-6. doi: 10.1038/nbt.2623. Epub 2013 Jun 23.
7
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.
Cell. 2013 Feb 28;152(5):1173-83. doi: 10.1016/j.cell.2013.02.022.
8
RNA-guided human genome engineering via Cas9.
Science. 2013 Feb 15;339(6121):823-6. doi: 10.1126/science.1232033. Epub 2013 Jan 3.
9
A synthetic biology framework for programming eukaryotic transcription functions.
Cell. 2012 Aug 3;150(3):647-58. doi: 10.1016/j.cell.2012.05.045.
10
Contextualizing context for synthetic biology--identifying causes of failure of synthetic biological systems.
Biotechnol J. 2012 Jul;7(7):856-66. doi: 10.1002/biot.201200085. Epub 2012 May 31.

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