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巴西亚马逊河流域罗西四齿脂鲤及其近缘种(鲤形目:脂鲤科:下口鲇属)的 DNA 条码。

DNA barcodes of Rosy Tetras and allied species (Characiformes: Characidae: Hyphessobrycon) from the Brazilian Amazon basin.

机构信息

Facultad de Ciencias Biológicas, Universidad Ricardo Palma, Surco, Perú

Laboratorio Temático de Biologia Molecular, Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus-AM, Brazil.

出版信息

PLoS One. 2014 May 30;9(5):e98603. doi: 10.1371/journal.pone.0098603. eCollection 2014.

Abstract

DNA barcoding can be an effective tool for fast and accurate species-level identification based on sequencing of the mitochondrial cytochrome c oxidase subunit (COI) gene. The diversity of this fragment can be used to estimate the richness of the respective species. In this study, we explored the use of DNA barcoding in a group of ornamental freshwater fish of the genus Hyphessobrycon. We sequenced the COI from 10 species of Hyphessobrycon belonging to the "Rosy Tetra Clade" collected from the Amazon and Negro River basins and combined our results with published data. The average conspecific and congeneric Kimura 2-parameter distances were 2.3% and 19.3%, respectively. Six of the 10 species were easily distinguishable by DNA barcoding (H. bentosi, H. copelandi, H. eques, H. epicharis, H. pulchrippinis, and H. sweglesi), whereas the remaining species (H. erythrostigma, H. pyrrhonotus, H. rosaceus and H. socolofi) lacked reciprocal monophyly. Although the COI gene was not fully diagnostic, the discovery of distinct evolutionary units in certain Hyphessobrycon species under the same specific epithet as well as haplotype sharing between different species suggest that DNA barcoding is useful for species identification in this speciose genus.

摘要

DNA 条形码技术可以作为一种快速、准确的物种鉴定方法,基于线粒体细胞色素 c 氧化酶亚基(COI)基因的测序。该片段的多样性可用于估计相应物种的丰富度。在这项研究中,我们探索了 DNA 条形码在 Hyphessobrycon 属观赏淡水鱼类中的应用。我们对来自亚马逊河和内格罗河盆地的“玫瑰色四齿鲷群”的 10 种 Hyphessobrycon 物种的 COI 进行了测序,并将我们的结果与已发表的数据进行了组合。种内和种间 Kimura 2-参数距离的平均值分别为 2.3%和 19.3%。这 10 个物种中的 6 个(Hyphessobrycon bentosi、Hyphessobrycon copelandi、Hyphessobrycon eques、Hyphessobrycon epicharis、Hyphessobrycon pulchrippinis 和 Hyphessobrycon sweglesi)可以通过 DNA 条形码轻松区分,而其余的物种(Hyphessobrycon erythrostigma、Hyphessobrycon pyrrhonotus、Hyphessobrycon rosaceus 和 Hyphessobrycon socolofi)缺乏相互单系性。尽管 COI 基因不完全具有诊断性,但在相同的特定名称下,某些 Hyphessobrycon 物种中发现了不同的进化单元,以及不同物种之间的单倍型共享,表明 DNA 条形码在这个多态性属的物种鉴定中是有用的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90d6/4039478/700dfc83f0e8/pone.0098603.g001.jpg

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