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全外显子组测序在突尼斯非综合征性耳聋家庭中鉴定出新型致病突变。

Whole exome sequencing identifies new causative mutations in Tunisian families with non-syndromic deafness.

作者信息

Riahi Zied, Bonnet Crystel, Zainine Rim, Louha Malek, Bouyacoub Yosra, Laroussi Nadia, Chargui Mariem, Kefi Rym, Jonard Laurence, Dorboz Imen, Hardelin Jean-Pierre, Salah Sihem Belhaj, Levilliers Jacqueline, Weil Dominique, McElreavey Kenneth, Boespflug Odile Tanguy, Besbes Ghazi, Abdelhak Sonia, Petit Christine

机构信息

Laboratoire de Génomique Biomédicale et Oncogénétique, Institut Pasteur de Tunis, Tunis, Tunisia; Faculté des Sciences de Tunis, Université de Tunis El Manar, Tunis, Tunisia.

INSERM UMRS 1120, Institut de la Vision, Paris, France.

出版信息

PLoS One. 2014 Jun 13;9(6):e99797. doi: 10.1371/journal.pone.0099797. eCollection 2014.

Abstract

Identification of the causative mutations in patients affected by autosomal recessive non syndromic deafness (DFNB forms), is demanding due to genetic heterogeneity. After the exclusion of GJB2 mutations and other mutations previously reported in Tunisian deaf patients, we performed whole exome sequencing in patients affected with severe to profound deafness, from four unrelated consanguineous Tunisian families. Four biallelic non previously reported mutations were identified in three different genes: a nonsense mutation, c.208C>T (p.R70X), in LRTOMT, a missense mutation, c.5417T>C (p.L1806P), in MYO15A and two splice site mutations, c.7395+3G>A, and c.2260+2T>A, in MYO15A and TMC1 respectively. We thereby provide evidence that whole exome sequencing is a powerful, cost-effective screening tool to identify mutations causing recessive deafness in consanguineous families.

摘要

由于基因异质性,确定常染色体隐性非综合征性耳聋(DFNB型)患者的致病突变颇具难度。在排除突尼斯耳聋患者中先前报道的GJB2突变及其他突变后,我们对来自四个不相关的突尼斯近亲家庭的重度至极重度耳聋患者进行了全外显子组测序。在三个不同基因中鉴定出四个双等位基因的此前未报道的突变:LRTOMT基因中的一个无义突变c.208C>T(p.R70X),MYO15A基因中的一个错义突变c.5417T>C(p.L1806P),以及分别在MYO15A和TMC1基因中的两个剪接位点突变c.7395+3G>A和c.2260+2T>A。我们由此证明全外显子组测序是一种强大且经济高效的筛查工具,可用于鉴定近亲家庭中导致隐性耳聋的突变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7be9/4057390/dc9c725fd6e0/pone.0099797.g001.jpg

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