Liu Tingting, Kaplan Ariel, Alexander Lisa, Yan Shannon, Wen Jin-Der, Lancaster Laura, Wickersham Charles E, Fredrick Kurt, Noller Harry, Tinoco Ignacio, Bustamante Carlos J
Jason L Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, United States Department of Physics, University of California, Berkeley, Berkeley, United States.
Jason L Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, United States Department of Physics, University of California, Berkeley, Berkeley, United States Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel Lorry I Lokey Interdisciplinary Center, Technion-Israel Institute of Technology, Haifa, Israel
Elife. 2014 Aug 11;3:e03406. doi: 10.7554/eLife.03406.
A detailed understanding of tRNA/mRNA translocation requires measurement of the forces generated by the ribosome during this movement. Such measurements have so far remained elusive and, thus, little is known about the relation between force and translocation and how this reflects on its mechanism and regulation. Here, we address these questions using optical tweezers to follow translation by individual ribosomes along single mRNA molecules, against an applied force. We find that translocation rates depend exponentially on the force, with a characteristic distance close to the one-codon step, ruling out the existence of sub-steps and showing that the ribosome likely functions as a Brownian ratchet. We show that the ribosome generates ∼13 pN of force, barely sufficient to unwind the most stable structures in mRNAs, thus providing a basis for their regulatory role. Our assay opens the way to characterizing the ribosome's full mechano-chemical cycle.
要详细了解转运RNA/信使RNA的易位过程,需要测量核糖体在该运动过程中产生的力。迄今为止,此类测量仍难以实现,因此,对于力与易位之间的关系以及这如何反映其机制和调控,人们知之甚少。在此,我们使用光镊跟踪单个核糖体沿着单个信使RNA分子进行翻译,并施加外力,以此来解决这些问题。我们发现,易位速率与力呈指数关系,其特征距离接近一个密码子步长,排除了亚步的存在,并表明核糖体可能起到布朗棘轮的作用。我们表明,核糖体产生约13皮牛的力,仅足以解开信使RNA中最稳定的结构,从而为其调控作用提供了基础。我们的检测方法为表征核糖体完整的机械化学循环开辟了道路。