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马达加斯加长春花的植物化学基因组学:解开生物碱引擎的最后谜团。

Phytochemical genomics of the Madagascar periwinkle: Unravelling the last twists of the alkaloid engine.

作者信息

Dugé de Bernonville Thomas, Clastre Marc, Besseau Sébastien, Oudin Audrey, Burlat Vincent, Glévarec Gaëlle, Lanoue Arnaud, Papon Nicolas, Giglioli-Guivarc'h Nathalie, St-Pierre Benoit, Courdavault Vincent

机构信息

Université François-Rabelais de Tours, EA2106 "Biomolécules et Biotechnologies Végétales", Tours, France.

Université de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Végétales, BP 42617 Auzeville, F-31326 Castanet-Tolosan, France; CNRS, UMR 5546, BP 42617 Auzeville, F-31326 Castanet-Tolosan, France.

出版信息

Phytochemistry. 2015 May;113:9-23. doi: 10.1016/j.phytochem.2014.07.023. Epub 2014 Aug 18.

Abstract

The Madagascar periwinkle produces a large palette of Monoterpenoid Indole Alkaloids (MIAs), a class of complex alkaloids including some of the most valuable plant natural products with precious therapeutical values. Evolutionary pressure on one of the hotspots of biodiversity has obviously turned this endemic Malagasy plant into an innovative alkaloid engine. Catharanthus is a unique taxon producing vinblastine and vincristine, heterodimeric MIAs with complex stereochemistry, and also manufactures more than 100 different MIAs, some shared with the Apocynaceae, Loganiaceae and Rubiaceae members. For over 60 years, the quest for these powerful anticancer drugs has inspired biologists, chemists, and pharmacists to unravel the chemistry, biochemistry, therapeutic activity, cell and molecular biology of Catharanthus roseus. Recently, the "omics" technologies have fuelled rapid progress in deciphering the last secret of strictosidine biosynthesis, the central precursor opening biosynthetic routes to several thousand MIA compounds. Dedicated C. roseus transcriptome, proteome and metabolome databases, comprising organ-, tissue- and cell-specific libraries, and other phytogenomic resources, were developed for instance by PhytoMetaSyn, Medicinal Plant Genomic Resources and SmartCell consortium. Tissue specific library screening, orthology comparison in species with or without MIA-biochemical engines, clustering of gene expression profiles together with various functional validation strategies, largely contributed to enrich the toolbox for plant synthetic biology and metabolic engineering of MIA biosynthesis.

摘要

马达加斯加长春花能产生大量单萜吲哚生物碱(MIAs),这是一类复杂的生物碱,其中包括一些具有珍贵治疗价值的最有价值的植物天然产物。对生物多样性热点地区之一的进化压力显然已将这种马达加斯加特有植物变成了一个创新的生物碱制造引擎。长春花属是一个独特的分类群,能产生长春碱和长春新碱,这两种具有复杂立体化学结构的异二聚体MIAs,并且还能制造100多种不同的MIAs,其中一些与夹竹桃科、马钱科和茜草科植物共有。60多年来,对这些强大抗癌药物的探索激励着生物学家、化学家和药剂师去揭示长春花的化学、生物化学、治疗活性、细胞和分子生物学。最近,“组学”技术推动了在破解士的宁苷生物合成这一最后秘密方面的快速进展,士的宁苷是通向数千种MIA化合物生物合成途径的核心前体。例如,植物代谢组学联盟、药用植物基因组资源和智能细胞联盟开发了专门的长春花转录组、蛋白质组和代谢组数据库,包括器官、组织和细胞特异性文库以及其他植物基因组资源。组织特异性文库筛选、在具有或不具有MIA生物化学引擎的物种中进行直系同源比较、基因表达谱聚类以及各种功能验证策略,在很大程度上有助于丰富用于植物合成生物学和MIA生物合成代谢工程的工具箱。

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