Cai Zhi, Zhang Guoyin, Tang Bin, Liu Yan, Fu Xiaojing, Zhang Xuejin
College of Computer and Information Engineering, Heilongjiang University of Science and Technology, Harbin, China.
College of Computer Science and Technology, Harbin Engineering University, Harbin, China.
Cell Biochem Biophys. 2015 Jul;72(3):727-39. doi: 10.1007/s12013-015-0524-9.
Neuraminidase (NA) is a membrane surface antigen which helps in the release of influenza viruses from the host cells after replication. Anti-influenza drugs such as zanamivir bind with eight highly conserved functional residues (R118, D151, R152, R224, E276, R292, R371, and Y406) in the active site of NA, thus restricting the viral release the from host cells. Binding of the drug in active site inhibits the ability of enzyme to cleave sialic acid residues on the cell membrane. Reports on the emergence of zanamivir-resistant strains of H1N1 Influenza virus necessitated a search for alternative drug candidates, preferably from plant source due to their known benefits such as less or no side effects, availability, and low cost. Withaferin A (WA), an active constituent of Withania somnifera ayurvedic herb, has been shown to have a broad range of medicinal properties including its anti-viral activity. The present study demonstrated that WA has the potential to attenuate the neuraminidase of H1N1 influenza. Our docking and simulation results predicted high binding affinity of the WA toward NA and revealed several interesting molecular interactions with the residues which are catalytically important during molecular dynamic simulations. The results presented in the article could be of high importance for further designing of target-specific anti-influenza drug candidates.
神经氨酸酶(NA)是一种膜表面抗原,在流感病毒复制后帮助其从宿主细胞中释放出来。扎那米韦等抗流感药物与NA活性位点的八个高度保守的功能残基(R118、D151、R152、R224、E276、R292、R371和Y406)结合,从而限制病毒从宿主细胞中释放。药物在活性位点的结合抑制了酶切割细胞膜上唾液酸残基的能力。关于H1N1流感病毒扎那米韦耐药株出现的报道促使人们寻找替代药物候选物,由于植物来源具有已知的益处,如副作用少或无副作用、可得性和低成本,因此优选从植物来源寻找。睡茄(Withania somnifera)阿育吠陀草药的活性成分Withaferin A(WA)已被证明具有广泛的药用特性,包括其抗病毒活性。本研究表明,WA具有减弱H1N1流感神经氨酸酶活性的潜力。我们的对接和模拟结果预测WA与NA具有高结合亲和力,并揭示了在分子动力学模拟过程中与具有催化重要性的残基之间的几种有趣的分子相互作用。本文给出的结果对于进一步设计靶向特异性抗流感药物候选物可能具有重要意义。