从日本稻田土壤中分离出的一株砷酸盐呼吸细菌——地杆菌属菌株OR-1的基因组序列草图
Draft Genome Sequence of Geobacter sp. Strain OR-1, an Arsenate-Respiring Bacterium Isolated from Japanese Paddy Soil.
作者信息
Ehara Ayaka, Suzuki Haruo, Amachi Seigo
机构信息
Graduate School of Horticulture, Chiba University, Matsudo, Matsudo City, Chiba, Japan.
Graduate School of Science and Engineering, Yamaguchi University, Yoshida, Yamaguchi, Japan.
出版信息
Genome Announc. 2015 Jan 29;3(1):e01478-14. doi: 10.1128/genomeA.01478-14.
Abstract
Here, we report a draft genome sequence of Geobacter sp. strain OR-1, an arsenate-respiring bacterium isolated from Japanese paddy soil. It contained two distinct arsenic islands, one including genes for a respiratory arsenate reductase (Arr) as well as for arsenic resistance (arsD-arsA-acr3-arsR-arrA-arrB) and the second containing only genes for arsenic resistance.
摘要
在此，我们报告了地杆菌属菌株OR-1的基因组序列草图，该菌株是从日本稻田土壤中分离出的一种以砷酸盐为呼吸底物的细菌。它包含两个不同的砷岛，一个包含呼吸型砷酸盐还原酶（Arr）以及砷抗性（arsD-arsA-acr3-arsR-arrA-arrB）相关基因，另一个仅包含砷抗性相关基因。
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本文引用的文献
1
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
2
Arsenic dissolution from Japanese paddy soil by a dissimilatory arsenate-reducing bacterium Geobacter sp. OR-1.异化砷酸盐还原菌 Geobacter sp. OR-1 对日本稻田土壤中砷的溶解。
Environ Sci Technol. 2013 Jun 18;47(12):6263-71. doi: 10.1021/es400231x. Epub 2013 May 28.
3
Molecular analysis of arsenate-reducing bacteria within Cambodian sediments following amendment with acetate.用乙酸盐改良后柬埔寨沉积物中砷酸盐还原菌的分子分析。
Appl Environ Microbiol. 2007 Feb;73(4):1041-8. doi: 10.1128/AEM.01654-06. Epub 2006 Nov 17.
4
Arsenic, microbes and contaminated aquifers.砷、微生物与受污染的含水层。
Trends Microbiol. 2005 Feb;13(2):45-9. doi: 10.1016/j.tim.2004.12.002.
5
Role of metal-reducing bacteria in arsenic release from Bengal delta sediments.金属还原菌在孟加拉三角洲沉积物砷释放中的作用。
Nature. 2004 Jul 1;430(6995):68-71. doi: 10.1038/nature02638.
6
The COG database: an updated version includes eukaryotes.COG数据库：更新版本涵盖真核生物。
BMC Bioinformatics. 2003 Sep 11;4:41. doi: 10.1186/1471-2105-4-41.
7
KEGG: kyoto encyclopedia of genes and genomes.京都基因与基因组百科全书（KEGG）
Nucleic Acids Res. 2000 Jan 1;28(1):27-30. doi: 10.1093/nar/28.1.27.
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