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新属新种大西洋假海洋杆菌,从大西洋表层海水中分离得到,以及将巴氏海洋杆菌、海生海洋杆菌、硝酸盐还原海洋杆菌、南海海洋杆菌、南极海洋杆菌和鞭毛海洋杆菌重新分类为新组合巴氏假海洋杆菌、海生假海洋杆菌、硝酸盐还原假海洋杆菌、南海假海洋杆菌、南极假海洋杆菌和鞭毛假海洋杆菌

Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.

作者信息

Lai Qiliang, Li Guizhen, Liu Xiupian, Du Yaping, Sun Fengqin, Shao Zongze

机构信息

State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, SOA; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen, 361005, China.

出版信息

Antonie Van Leeuwenhoek. 2015 Apr;107(4):1065-74. doi: 10.1007/s10482-015-0398-2. Epub 2015 Feb 7.

Abstract

A taxonomic study was carried out on strain 22II-S11g(T), which was isolated from the surface seawater of the Atlantic Ocean. The bacterium was found to be Gram-negative, rod shaped without flagellum, oxidase positive and weakly catalase positive. Growth was observed at NaCl concentrations of 0.5-9 % and at temperatures of 10-41 °C. The isolate was incapable of gelatin hydrolysis and unable to reduce nitrate to nitrite, degrade aesculin and Tween 80. On the basis of 16S rRNA gene sequence similarity, strain 22II-S11g(T) was found to be most closely related to Oceanicola batsensis HTCC2597(T) (97.26 %), followed by Oceanicola nitratireducens JLT1210(T) (96.39 %), whilst other species of genus Oceanicola shared 94.00-96.34 % sequence similarity. However, it showed low similarity to Oceanicola granulosus HTCC2516(T) (94.79 %), the type species of the genus Oceanicola. Phylogenetic analysis showed that strain 22II-S11g(T) formed a clade with six species currently classified in the genus Oceanicola, but strain O. granulosus HTCC2516(T) and strain O. litoreus M-M22(T) clustered with two other genera respectively. The ANI values between strain 22II-S11g(T) and two type strains (O. batsensis HTCC2597(T) and O. granulosus HTCC2516(T)) are 91.86 and 91.81 % respectively. The digital DNA-DNA hybridization estimate values between strain 22II-S11g(T) and two type strains (O. batsensis HTCC2597(T) and O. granulosus HTCC2516(T)) are 23.4 ± 2.4 and 20.0 ± 2.3 %, respectively. The principal fatty acids were identified as summed feature 8 (C18:1 ω7c/ω6c), C16:0, C18:1 ω7c11-methyl and C12:0 3OH. The G+C content determined from the draft genome sequence is 64.1 mol%. The respiratory quinone was determined to be Q-10 (100 %). Phosphatidylethanolamine, phosphatidylglycerol, an aminolipid, phosphatidylcholine, a phospholipid and three lipids were identified in the polar lipids. The combined genotypic and phenotypic data also show that strain 22II-S11g(T) should not be assigned to the genus Oceanicola; consequently strain 22II-S11g(T) is concluded to represent a novel species of a novel genus in the family Rhodobacteraceae, for which the name Pseudooceanicola atlanticus gen. nov., sp. nov. is proposed (type strain 22II-S11g(T) = KCTC 42004(T) = LMG 27424(T) = MCCC 1A09160(T)). Six misclassified species should be transferred to the novel genus Pseudooceanicola as follows: O. batsensis should be transferred to the genus Pseudooceanicola as Pseudooceanicola batsensis comb. nov. (type strain HTCC2597(T) = ATCC BAA-863(T) = DSM 15984(T) = KCTC 12145(T)); Oceanicola marinus should be transferred to the genus Pseudooceanicola as Pseudooceanicola marinus comb. nov. (type strain AZO-C(T) = LMG 23705(T) = BCRC 17591(T)); O. nitratireducens should be transferred to the genus Pseudooceanicola as Pseudooceanicola nitratireducens comb. nov. (type strain JLT1210(T) = LMG 24663(T) = CGMCC 1.7292(T)); Oceanicola nanhaiensis should be transferred to the genus Pseudooceanicola as Pseudooceanicola nanhaiensis comb. nov. (type strain SS011B1-20(T) = LMG 23508(T) = CGMCC 1.6293(T)); Oceanicola antarcticus should be transferred to the genus Pseudooceanicola as Pseudooceanicola antarcticus comb. nov. (type strain Ar-45(T) = CGMCC 1.12662(T) = LMG 27868(T)); and Oceanicola flagellatus should be transferred to the genus Pseudooceanicola as Pseudooceanicola flagellatus comb. nov. (type strain DY470(T) = CGMCC 1.12664(T) = LMG 27871(T)).

摘要

对从大西洋表层海水中分离得到的22II-S11g(T)菌株进行了分类学研究。该细菌为革兰氏阴性,无鞭毛的杆状,氧化酶阳性,过氧化氢酶弱阳性。在NaCl浓度为0.5-9%和温度为10-41°C的条件下可观察到生长。该分离株不能水解明胶,不能将硝酸盐还原为亚硝酸盐,不能降解七叶苷和吐温80。基于16S rRNA基因序列相似性,发现22II-S11g(T)菌株与巴氏海栖菌HTCC2597(T)关系最为密切(97.26%),其次是硝酸盐还原海栖菌JLT1210(T)(96.39%),而海栖菌属的其他物种序列相似性为94.00-96.34%。然而,它与海栖菌属的模式种颗粒海栖菌HTCC2516(T)的相似性较低(94.79%)。系统发育分析表明,22II-S11g(T)菌株与目前分类在海栖菌属中的六个物种形成一个进化枝,但颗粒海栖菌HTCC2516(T)菌株和滨海海栖菌M-M22(T)菌株分别与另外两个属聚类。22II-S11g(T)菌株与两个模式菌株(巴氏海栖菌HTCC2597(T)和颗粒海栖菌HTCC2516(T))的ANI值分别为91.86%和91.81%。22II-S11g(T)菌株与两个模式菌株(巴氏海栖菌HTCC2597(T)和颗粒海栖菌HTCC2516(T))的数字DNA-DNA杂交估计值分别为23.4±2.4%和20.0±2.3%。主要脂肪酸被鉴定为总和特征8(C18:1 ω7c/ω6c)、C16:0、C18:1 ω7c 11-甲基和C12:0 3OH。根据基因组草图序列确定的G+C含量为64.1 mol%。呼吸醌被确定为Q-10(100%)。在极性脂质中鉴定出磷脂酰乙醇胺、磷脂酰甘油、一种氨基脂质、磷脂酰胆碱、一种磷脂和三种脂质。综合的基因型和表型数据还表明,22II-S11g(T)菌株不应归入海栖菌属;因此,得出结论,22II-S11g(T)菌株代表红杆菌科一个新属的一个新物种,为此提出新属名假海栖菌属(Pseudooceanicola),新种名大西洋假海栖菌(Pseudooceanicola atlanticus)(模式菌株22II-S11g(T)=KCTC 42004(T)=LMG 27424(T)=MCCC 1A09160(T))。六个分类错误的物种应转移到新属假海栖菌属,如下:巴氏海栖菌应作为巴氏假海栖菌(Pseudooceanicola batsensis)转移到假海栖菌属(模式菌株HTCC2597(T)=ATCC BAA-863(T)=DSM 15984(T)=KCTC 12145(T));海栖海栖菌应作为海栖假海栖菌(Pseudooceanicola marinus)转移到假海栖菌属(模式菌株AZO-C(T)=LMG 23705(T)=BCRC 17591(T));硝酸盐还原海栖菌应作为硝酸盐还原假海栖菌(Pseudooceanicola nitratireducens)转移到假海栖菌属(模式菌株JLT1210(T)=LMG 24663(T)=CGMCC 1.7292(T));南海海栖菌应作为南海假海栖菌(Pseudooceanicola nanhaiensis)转移到假海栖菌属(模式菌株SS011B1-20(T)=LMG 23508(T)=CGMCC 1.6293(T));南极海栖菌应作为南极假海栖菌(Pseudooceanicola antarcticus)转移到假海栖菌属(模式菌株Ar-45(T)=CGMCC 1.12662(T)=LMG 27868(T));鞭毛海栖菌应作为鞭毛假海栖菌(Pseudooceanicola flagellatus)转移到假海栖菌属(模式菌株DY470(T)=CGMCC 1.12664(T)=LMG 27871(T))。

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