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嗜水气单胞菌MtaN-1与S-腺苷同型半胱氨酸相互作用的结晶及初步X射线衍射分析

Crystallization and preliminary X-ray diffraction analysis of the interaction of Aeromonas hydrophila MtaN-1 with S-adenosylhomocysteine.

作者信息

Xu Yongbin, Quan Chun Shan, Jin Xiaoling, Jin Xuanzhen, Zhao Jing, Jin Liming, Kim Jin Sik, Guo Jianyun, Fan Shengdi, Ha Nam Chul

机构信息

Department of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.

College of Engineering, Yanbian University, Jilin Yanji 133002, People's Republic of China.

出版信息

Acta Crystallogr F Struct Biol Commun. 2015 Apr;71(Pt 4):393-6. doi: 10.1107/S2053230X15003647. Epub 2015 Mar 20.

Abstract

Prokaryotic 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (MtaN) is a multifunctional enzyme that can hydrolyze S-adenosyl-L-homocysteine (SAH) and S-methyl-5'-thioadenosine (MTA) to give S-ribosyl-L-homocysteine (SRH) and S-methyl-5'-thioribose (MTR), respectively. This reaction plays a key role in several metabolic pathways, including biological methylation, polyamine biosynthesis, methionine recycling and bacterial quorum sensing. Structurally, MtaN belongs to the MtnN subfamily of the purine nucleoside phosphorylase (PNP)/uridine phosphorylase (UDP) phosphorylase family. Aeromonas hydrophila has two MtnN subfamily proteins: MtaN-1, a periplasmic protein with an N-terminal signal sequence, and MtaN-2, a cytosolic protein. In this study, MtaN-1 from Aeromonas hydrophila was successfully expressed and purified using Ni-NTA affinity, Q anion-exchange and gel-filtration chromatography. Crystals of the protein in complex with the substrate SAH were obtained and diffracted to a resolution of 1.4 Å. The crystals belonged to the trigonal space group P3₁21 or P3₂21, with unit-cell parameters a = b = 102.7, c = 118.8 Å. The asymmetric unit contained two molecules of MtaN-1 complexed with SAH.

摘要

原核生物5'-甲硫腺苷/S-腺苷高半胱氨酸核苷酶(MtaN)是一种多功能酶,它可以分别将S-腺苷-L-高半胱氨酸(SAH)和S-甲基-5'-硫代腺苷(MTA)水解为S-核糖基-L-高半胱氨酸(SRH)和S-甲基-5'-硫代核糖(MTR)。该反应在包括生物甲基化、多胺生物合成、甲硫氨酸循环和细菌群体感应在内的多种代谢途径中起关键作用。从结构上看,MtaN属于嘌呤核苷磷酸化酶(PNP)/尿苷磷酸化酶(UDP)磷酸化酶家族的MtnN亚家族。嗜水气单胞菌有两种MtnN亚家族蛋白:MtaN-1,一种具有N端信号序列的周质蛋白;以及MtaN-2,一种胞质蛋白。在本研究中,利用镍-亚氨基二乙酸(Ni-NTA)亲和、Q阴离子交换和凝胶过滤色谱法成功表达并纯化了嗜水气单胞菌的MtaN-1。获得了该蛋白与底物SAH的复合物晶体,并将其衍射分辨率提高到1.4 Å。晶体属于三方晶系空间群P3₁21或P3₂21,晶胞参数a = b = 102.7,c = 118.8 Å。不对称单元包含两个与SAH复合的MtaN-1分子。

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