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常绿植物齿叶树参(五加科)的完整叶绿体基因组序列

The complete chloroplast genome sequence of the evergreen plant Dendropanax dentiger (Araliaceae).

作者信息

Wang Li, Du Xia-Jin, Li Xiao-Feng

机构信息

a School of Life Sciences, Central South University , Changsha , PR China.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4193-4194. doi: 10.3109/19401736.2014.1003909. Epub 2015 May 14.

Abstract

The complete chloroplast genome of the evergreen plant Dendropanax dentiger (Araliaceae) has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 156,687 bp in size, and comprises a pair of inverted repeat (IR) regions of 25,880 bp each, a large single-copy (LSC) region of 86,680 bp, and a small single-copy (SSC) region of 18,247 bp. The chloroplast genome contains 134 genes, including 89 protein-coding genes (81 PCG species), eight ribosomal RNA genes (four rRNA species), and 37 transfer RNA genes (30 tRNA species). Out of these genes, 16 harbor a single intron, and two contain a couple of introns. The overall A + T content of the whole genome is 62.0%, while the corresponding values of the LSC, SSC, and IR regions are 63.8%, 68.0% and 56.9%, respectively.

摘要

常绿植物齿叶树参(五加科)的完整叶绿体基因组已通过全基因组Illumina测序数据重建。环状基因组大小为156,687 bp,由两个25,880 bp的反向重复(IR)区域、一个86,680 bp的大单拷贝(LSC)区域和一个18,247 bp的小单拷贝(SSC)区域组成。叶绿体基因组包含134个基因,其中包括89个蛋白质编码基因(81种PCG)、8个核糖体RNA基因(4种rRNA)和37个转运RNA基因(30种tRNA)。在这些基因中,16个基因含有一个内含子,2个基因含有两个内含子。全基因组的总体A+T含量为62.0%,而LSC、SSC和IR区域的相应值分别为63.8%、68.0%和56.9%。

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