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用于检测近期混合的差分进化方法。

Differential Evolution approach to detect recent admixture.

作者信息

Kozlov Konstantin, Chebotarev Dmitri, Hassan Mehedi, Triska Martin, Triska Petr, Flegontov Pavel, Tatarinova Tatiana V

出版信息

BMC Genomics. 2015;16 Suppl 8(Suppl 8):S9. doi: 10.1186/1471-2164-16-S8-S9. Epub 2015 Jun 18.

Abstract

The genetic structure of human populations is extraordinarily complex and of fundamental importance to studies of anthropology, evolution, and medicine. As increasingly many individuals are of mixed origin, there is an unmet need for tools that can infer multiple origins. Misclassification of such individuals can lead to incorrect and costly misinterpretations of genomic data, primarily in disease studies and drug trials. We present an advanced tool to infer ancestry that can identify the biogeographic origins of highly mixed individuals. reAdmix can incorporate individual's knowledge of ancestors (e.g. having some ancestors from Turkey or a Scottish grandmother). reAdmix is an online tool available at http://chcb.saban-chla.usc.edu/reAdmix/.

摘要

人类群体的基因结构极其复杂,对于人类学、进化研究和医学研究至关重要。由于越来越多的个体具有混合血统,因此迫切需要能够推断多个血统的工具。对这些个体的错误分类可能导致对基因组数据的错误且代价高昂的误解,主要出现在疾病研究和药物试验中。我们提出了一种先进的血统推断工具,它可以识别高度混合个体的生物地理起源。reAdmix可以纳入个体对祖先的了解(例如有一些来自土耳其的祖先或一位苏格兰祖母)。reAdmix是一个在线工具,可在http://chcb.saban-chla.usc.edu/reAdmix/获取。

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