Barragán Sandra, Rueda Cristina, Fernández Miguel A, Peddada Shyamal D
Departamento de Estadística e Investigación Operativa, Universidad de Valladolid, Valladolid, Spain.
Biostatistics Branch, NIEHS (NIH), Research Triangle Park, North Carolina, United States of America.
PLoS One. 2015 Jul 7;10(7):e0124842. doi: 10.1371/journal.pone.0124842. eCollection 2015.
Oscillatory systems in biology are tightly regulated process where the individual components (e.g. genes) express in an orderly manner by virtue of their functions. The temporal order among the components of an oscillatory system may potentially be disrupted for various reasons (e.g. environmental factors). As a result some components of the system may go out of order or even cease to participate in the oscillatory process. In this article, we develop a novel framework to evaluate whether the temporal order is unchanged in different populations (or experimental conditions). We also develop methodology to estimate the order among the components with a suitable notion of "confidence." Using publicly available data on S. pombe, S. cerevisiae and Homo sapiens we discover that the temporal order among the genes cdc18; mik1; hhf1; hta2; fkh2 and klp5 is evolutionarily conserved from yeast to humans.
生物学中的振荡系统是受到严格调控的过程,其中各个组成部分(如基因)凭借其功能有序表达。振荡系统各组成部分之间的时间顺序可能因各种原因(如环境因素)而被打乱。结果,系统的某些组成部分可能会失调,甚至停止参与振荡过程。在本文中,我们开发了一个新颖的框架来评估不同群体(或实验条件)下时间顺序是否保持不变。我们还开发了一种方法,以合适的“置信度”概念来估计各组成部分之间的顺序。利用公开可得的粟酒裂殖酵母、酿酒酵母和智人的数据,我们发现基因cdc18、mik1、hhf1、hta2、fkh2和klp5之间的时间顺序从酵母到人类在进化上是保守的。