Seear P J, Rosato E, Goodall-Copestake W P, Barber I
Department of Neuroscience, Psychology and Behaviour, College of Medicine, Biological Sciences and Psychology, University of Leicester, Leicester, LE1 7RH, UK.
Department of Genetics, College of Medicine, Biological Sciences and Psychology, University of Leicester, Leicester, LE1 7RH, UK.
Mol Ecol. 2015 Sep;24(17):4474-88. doi: 10.1111/mec.13317. Epub 2015 Aug 3.
Gene duplication and subsequent divergence can lead to the evolution of new functions and lineage-specific traits. In sticklebacks, the successive duplication of a mucin gene (MUC19) into a tandemly arrayed, multigene family has enabled the production of copious amounts of 'spiggin', a secreted adhesive protein essential for nest construction. Here, we examine divergence between spiggin genes among three-spined sticklebacks (Gasterosteus aculeatus) from ancestral marine and derived freshwater populations, and propose underpinning gene duplication mechanisms. Sanger sequencing revealed substantial diversity among spiggin transcripts, including alternatively spliced variants and interchromosomal spiggin chimeric genes. Comparative analysis of the sequenced transcripts and all other spiggin genes in the public domain support the presence of three main spiggin lineages (spiggin A, spiggin B and spiggin C) with further subdivisions within spiggin B (B1, B2) and spiggin C (C1, C2). Spiggin A had diverged least from the ancestral MUC19, while the spiggin C duplicates had diversified most substantially. In silico translations of the spiggin gene open reading frames predicted that spiggins A and B are secreted as long mucin-like polymers, while spiggins C1 and C2 are secreted as short monomers, with putative antimicrobial properties. We propose that diversification of duplicated spiggin genes has facilitated local adaptation of spiggin to a range of aquatic habitats.
基因复制及随后的分化可导致新功能和谱系特异性性状的进化。在棘鱼中,粘蛋白基因(MUC19)连续复制形成串联排列的多基因家族,从而能够产生大量的“spiggin”,这是一种筑巢所必需的分泌型粘附蛋白。在此,我们研究了来自原始海洋种群和衍生淡水种群的三刺棘鱼(Gasterosteus aculeatus)中spiggin基因之间的差异,并提出了潜在的基因复制机制。桑格测序揭示了spiggin转录本之间存在大量差异,包括可变剪接变体和染色体间的spiggin嵌合基因。对已测序转录本与公共数据库中所有其他spiggin基因的比较分析支持存在三个主要的spiggin谱系(spiggin A、spiggin B和spiggin C),其中spiggin B(B1、B2)和spiggin C(C1、C2)内还有进一步的细分。Spiggin A与原始MUC19的差异最小,而spiggin C的复制体差异最大。spiggin基因开放阅读框的电子翻译预测,spiggins A和B作为长的粘蛋白样聚合物分泌,而spiggins C1和C2作为短单体分泌,具有推定的抗菌特性。我们提出,复制的spiggin基因的多样化促进了spiggin对一系列水生栖息地的局部适应。