Suppr超能文献

塑造定制山脉:用基展开法确定自由能。

Sculpting bespoke mountains: Determining free energies with basis expansions.

作者信息

Whitmer Jonathan K, Fluitt Aaron M, Antony Lucas, Qin Jian, McGovern Michael, de Pablo Juan J

机构信息

Department of Chemical and Biomolecular Engineering, University of Notre Dame du Lac, Notre Dame, Indiana 46556, USA.

Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA.

出版信息

J Chem Phys. 2015 Jul 28;143(4):044101. doi: 10.1063/1.4927147.

Abstract

The intriguing behavior of a wide variety of physical systems, ranging from amorphous solids or glasses to proteins, is a direct manifestation of underlying free energy landscapes riddled with local minima separated by large barriers. Exploring such landscapes has arguably become one of statistical physics's great challenges. A new method is proposed here for uniform sampling of rugged free energy surfaces. The method, which relies on special Green's functions to approximate the Dirac delta function, improves significantly on existing simulation techniques by providing a boundary-agnostic approach that is capable of mapping complex features in multidimensional free energy surfaces. The usefulness of the proposed approach is established in the context of a simple model glass former and model proteins, demonstrating improved convergence and accuracy over existing methods.

摘要

从非晶态固体或玻璃到蛋白质等各种各样的物理系统所展现出的有趣行为,是其潜在自由能景观的直接体现,这些景观布满了被大能量势垒隔开的局部极小值。探索这样的景观可以说是统计物理学面临的重大挑战之一。本文提出了一种新方法,用于对崎岖的自由能表面进行均匀采样。该方法依靠特殊的格林函数来近似狄拉克δ函数,通过提供一种与边界无关的方法,显著改进了现有的模拟技术,这种方法能够映射多维自由能表面中的复杂特征。在一个简单的模型玻璃形成体和模型蛋白质的背景下,证明了所提出方法的有效性,显示出比现有方法有更好的收敛性和准确性。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验