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漳州科尔迪氏菌新种,从地表淡水中分离得到。

Kordia zhangzhouensis sp. nov., isolated from surface freshwater.

作者信息

Du Juan, Liu Yang, Lai Qiliang, Dong Chunming, Xie Yanrong, Shao Zongze

机构信息

State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, PR China.

出版信息

Int J Syst Evol Microbiol. 2015 Oct;65(10):3379-3383. doi: 10.1099/ijsem.0.000424.

Abstract

An aerobic, Gram-stain-negative, rod-shaped and non-motile bacterium, JS14SB-1T, was isolated from the surface freshwater of the Jiulong River, PR China. Strain JS14SB-1T grew at 15–38 °C (optimum, 28–35 °C), at pH 6.0–9.0 (optimum pH 7.0) and in the presence of 1.0–7.0 % (w/v) NaCl [optimum 3.0–5.0 % (w/v)]. Phylogenetic analysis, based on 16S rRNA gene sequences, indicated that strain JS14SB-1T was affiliated to the genus Kordia, sharing low similarities (95.1–97.1 %) to all type strains of species of this genus. The digital DNA–DNA hybridization (DDH) value between strain JS14SB-1T and the closely related strain Kordia jejudonensis SSK3-3T was 20.70 ± 2.33 % and far below the 70 % DDH value taken as the gold standard for delineation of bacterial species. The major fatty acids were identified as iso-C15 : 0 and iso-C17 : 0 3-OH. The polar lipids were phosphatidylethanolamine, glycolipid, aminolipid, several unidentified phospholipids and lipids. The predominant menaquinone was MK-6. The G+C content of the genomic DNA was 33.8 mol%. Based on the phenotypic, phylogenetic and chemotaxonomic distinctiveness, strain JS14SB-1T is considered to represent a novel species of the genus Kordia, for which the name Kordia zhangzhouensis sp. nov. is proposed; the type strain is JS14SB-1T ( = MCCC 1A00726T = KCTC 42140T).

摘要

从中国福建省九龙江表层淡水中分离出一株需氧、革兰氏染色阴性、杆状且无运动性的细菌,命名为JS14SB-1T。菌株JS14SB-1T在15-38 °C(最适温度为28-35 °C)、pH值6.0-9.0(最适pH值7.0)以及1.0-7.0%(w/v)NaCl(最适浓度为3.0-5.0%(w/v))条件下生长。基于16S rRNA基因序列的系统发育分析表明,菌株JS14SB-1T隶属于科尔迪氏菌属,与该属所有模式菌株的相似性较低(95.1-97.1%)。菌株JS14SB-1T与亲缘关系最近的菌株济州科尔迪氏菌SSK3-3T的数字DNA-DNA杂交(DDH)值为20.70 ± 2.33%,远低于作为界定细菌物种金标准的70% DDH值。主要脂肪酸鉴定为异C15 : 0和异C17 : 0 3-OH。极性脂包括磷脂酰乙醇胺、糖脂、氨基脂、几种未鉴定的磷脂和脂类。主要甲基萘醌为MK-6。基因组DNA的G+C含量为33.8 mol%。基于表型、系统发育和化学分类特征,菌株JS14SB-1T被认为代表科尔迪氏菌属的一个新物种,为此提出新名称漳州科尔迪氏菌(Kordia zhangzhouensis sp. nov.);模式菌株为JS14SB-1T(=MCCC 1A00726T=KCTC 42140T)。

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