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小龙虾胃石几丁质细胞外基质的蛋白质组学分析揭示了假定的蛋白质复合物以及GAP 65的核心作用。

Proteomic analysis of the crayfish gastrolith chitinous extracellular matrix reveals putative protein complexes and a central role for GAP 65.

作者信息

Glazer Lilah, Roth Ziv, Weil Simy, Aflalo Eliahu D, Khalaila Isam, Sagi Amir

机构信息

Department of Life Sciences and The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel.

Department of Life Sciences and The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel.

出版信息

J Proteomics. 2015 Oct 14;128:333-43. doi: 10.1016/j.jprot.2015.08.016. Epub 2015 Aug 28.

Abstract

UNLABELLED

Chitin is a major component of arthropod cuticles, where it forms a three-dimensional network that constitutes the scaffold upon which cuticles form. The chitin fibers that form this network are closely associated with specific structural proteins, while the cuticular matrix contains many additional structural, enzymatic and other proteins. We study the crayfish gastrolith as a simple model for the assembly of calcified cuticular structures, with particular focus on the proteins involved in this process. The present study integrates a gastrolith-forming epithelium transcriptomic library with data from mass spectrometry analysis of proteins extracted from the gastrolith matrix to obtain a near-complete picture of gastrolith protein content. Using native protein separation we identified 24 matrix proteins, of which 14 are novel. Further analysis led to discovery of three putative protein complexes, all containing GAP 65 the most abundant gastrolith structural protein. Using immunological methods we further studied the role of GAP 65 in the gastrolith matrix and forming epithelium, as well as in the newly identified protein complexes. We propose that gastrolith matrix construction is a sequential process in which protein complexes are dynamically assembled and disassembled around GAP 65, thus changing their functional properties to perform each step in the construction process.

BIOLOGICAL SIGNIFICANCE

The scientific interest on which this study is based arises from three main features of gastroliths: (1) Gastroliths possess partial analogy to cuticles both in structural and molecular properties, and may be regarded, with the appropriate reservations (see Introduction), as simple models for cuticle assembly. At the same time, gastroliths are terminally assembled during a well-defined period, which can be controlled in the laboratory, making them significantly easier to study than cuticles. (2) Gastroliths, like the crayfish exoskeleton, contain stable amorphous calcium carbonate (ACC) rather than crystalline calcite. The biological mechanism for the stabilization of a naturally unstable, but at the same time biologically highly available, calcium carbonate polymorph is of great interest from the pharmaceutical point of view. (3) The gastrolith organic matrix is based on a highly structured chitin network that interacts with a variety of substances. This biologically manipulated, biodegradable structure is in itself of biotechnological and pharmaceutical potential. A growing body of evidence indicates that proteins play central roles in all above aspects of gastrolith construction. This study offers the first comprehensive screening of gastrolith proteins, and we believe that the analysis presented in this work can not only help reveal basic biological questions regarding assembly of mineralized and non-mineralized cuticular structures, but may also serve as basis for applied research in the fields of agriculture (e.g. cuticle-based pest management), health (e.g. bioavailable calcium supplements and biodegradable drug carriers) and materials science (e.g. non-toxic scaffolds for water purification).

摘要

未标记

几丁质是节肢动物角质层的主要成分,它在其中形成一个三维网络,构成角质层形成的支架。形成这个网络的几丁质纤维与特定的结构蛋白紧密相连,而角质层基质包含许多其他结构蛋白、酶蛋白和其他蛋白质。我们将小龙虾胃石作为钙化角质层结构组装的一个简单模型进行研究,特别关注参与这一过程的蛋白质。本研究将胃石形成上皮的转录组文库与从胃石基质中提取的蛋白质的质谱分析数据相结合,以获得胃石蛋白质含量的近乎完整的图谱。通过天然蛋白质分离,我们鉴定出24种基质蛋白,其中14种是新发现的。进一步分析发现了三种假定的蛋白质复合物,它们都含有胃石中最丰富的结构蛋白GAP 65。我们使用免疫学方法进一步研究了GAP 65在胃石基质和形成上皮中以及在新鉴定的蛋白质复合物中的作用。我们提出,胃石基质构建是一个连续的过程,其中蛋白质复合物围绕GAP 65动态组装和解聚,从而改变它们的功能特性以执行构建过程中的每一步。

生物学意义

本研究基于的科学兴趣源于胃石的三个主要特征:(1)胃石在结构和分子特性上与角质层部分相似,并且在有适当保留意见的情况下(见引言),可以被视为角质层组装的简单模型。同时,胃石在一个明确的时期内最终组装完成,这在实验室中可以控制,使得它们比角质层更容易研究。(2)与小龙虾外骨骼一样,胃石含有稳定的无定形碳酸钙(ACC)而不是结晶方解石。从制药角度来看,一种天然不稳定但同时在生物学上高度可用的碳酸钙多晶型物的稳定化生物学机制非常令人感兴趣。(3)胃石有机基质基于一个高度结构化的几丁质网络,该网络与多种物质相互作用。这种经过生物学操纵的、可生物降解的结构本身具有生物技术和制药潜力。越来越多的证据表明,蛋白质在胃石构建的所有上述方面都起着核心作用。本研究首次对胃石蛋白质进行了全面筛选,我们相信本工作中呈现的分析不仅有助于揭示关于矿化和非矿化角质层结构组装的基本生物学问题,而且还可为农业(如基于角质层的害虫管理)、健康(如生物可利用的钙补充剂和可生物降解的药物载体)和材料科学(如水净化用无毒支架)等领域的应用研究提供基础。

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