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半胱氨酸作为铁铁氢化酶H簇生物合成中的配体平台。

Cysteine as a ligand platform in the biosynthesis of the FeFe hydrogenase H cluster.

作者信息

Suess Daniel L M, Bürstel Ingmar, De La Paz Liliana, Kuchenreuther Jon M, Pham Cindy C, Cramer Stephen P, Swartz James R, Britt R David

机构信息

Department of Chemistry, University of California, Davis, CA 95616;

Department of Chemical Engineering, Stanford University, Stanford, CA 94305;

出版信息

Proc Natl Acad Sci U S A. 2015 Sep 15;112(37):11455-60. doi: 10.1073/pnas.1508440112. Epub 2015 Aug 31.

Abstract

Hydrogenases catalyze the redox interconversion of protons and H2, an important reaction for a number of metabolic processes and for solar fuel production. In FeFe hydrogenases, catalysis occurs at the H cluster, a metallocofactor comprising a [4Fe-4S]H subcluster coupled to a [2Fe]H subcluster bound by CO, CN(-), and azadithiolate ligands. The [2Fe]H subcluster is assembled by the maturases HydE, HydF, and HydG. HydG is a member of the radical S-adenosyl-L-methionine family of enzymes that transforms Fe and L-tyrosine into an [Fe(CO)2(CN)] synthon that is incorporated into the H cluster. Although it is thought that the site of synthon formation in HydG is the "dangler" Fe of a [5Fe] cluster, many mechanistic aspects of this chemistry remain unresolved including the full ligand set of the synthon, how the dangler Fe initially binds to HydG, and how the synthon is released at the end of the reaction. To address these questions, we herein show that L-cysteine (Cys) binds the auxiliary [4Fe-4S] cluster of HydG and further chelates the dangler Fe. We also demonstrate that a [4Fe-4S]aux[CN] species is generated during HydG catalysis, a process that entails the loss of Cys and the [Fe(CO)2(CN)] fragment; on this basis, we suggest that Cys likely completes the coordination sphere of the synthon. Thus, through spectroscopic analysis of HydG before and after the synthon is formed, we conclude that Cys serves as the ligand platform on which the synthon is built and plays a role in both Fe(2+) binding and synthon release.

摘要

氢化酶催化质子与H₂之间的氧化还原相互转化,这一反应对于许多代谢过程以及太阳能燃料生产都至关重要。在铁铁氢化酶中,催化作用发生在H簇,这是一种金属辅因子,由一个与[2Fe]H亚簇偶联的[4Fe-4S]H亚簇组成,[2Fe]H亚簇由一氧化碳、氰根离子(CN⁻)和氮杂二硫醇盐配体结合。[2Fe]H亚簇由成熟酶HydE、HydF和HydG组装而成。HydG是自由基S-腺苷-L-甲硫氨酸家族的酶成员之一,它将铁和L-酪氨酸转化为一种[Fe(CO)₂(CN)]合成子,该合成子会并入H簇。尽管人们认为HydG中合成子的形成位点是[5Fe]簇的“悬垂”铁,但该化学反应的许多机理方面仍未得到解决,包括合成子的完整配体集、悬垂铁最初如何与HydG结合以及合成子在反应结束时如何释放。为了解决这些问题,我们在此表明L-半胱氨酸(Cys)结合HydG的辅助[4Fe-4S]簇,并进一步螯合悬垂铁。我们还证明在HydG催化过程中会生成一种[4Fe-4S]aux[CN]物种,这一过程需要半胱氨酸和[Fe(CO)₂(CN)]片段的丢失;在此基础上,我们认为半胱氨酸可能完善了合成子的配位球。因此,通过对合成子形成前后的HydG进行光谱分析,我们得出结论,半胱氨酸作为合成子构建的配体平台,在Fe²⁺结合和合成子释放中均发挥作用。

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本文引用的文献

1
[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis.
Biochemistry. 2015 Mar 10;54(9):1807-18. doi: 10.1021/bi501205e. Epub 2015 Mar 2.
2
X-ray crystallographic and EPR spectroscopic analysis of HydG, a maturase in [FeFe]-hydrogenase H-cluster assembly.
Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1362-7. doi: 10.1073/pnas.1417252112. Epub 2015 Jan 20.
3
Crystal structure of HydG from Carboxydothermus hydrogenoformans: a trifunctional [FeFe]-hydrogenase maturase.
Chembiochem. 2015 Feb 9;16(3):397-402. doi: 10.1002/cbic.201402661. Epub 2014 Dec 10.
4
Mössbauer spectroscopy of Fe/S proteins.
Biochim Biophys Acta. 2015 Jun;1853(6):1395-405. doi: 10.1016/j.bbamcr.2014.12.005. Epub 2014 Dec 10.
5
Crystal structure of tryptophan lyase (NosL): evidence for radical formation at the amino group of tryptophan.
Angew Chem Int Ed Engl. 2014 Oct 27;53(44):11840-4. doi: 10.1002/anie.201407320. Epub 2014 Sep 5.
6
H-cluster assembly during maturation of the [FeFe]-hydrogenase.
J Biol Inorg Chem. 2014 Aug;19(6):747-57. doi: 10.1007/s00775-014-1168-8. Epub 2014 Jun 28.
7
Hydrogenases.
Chem Rev. 2014 Apr 23;114(8):4081-148. doi: 10.1021/cr4005814. Epub 2014 Mar 21.
8
Radical S-adenosylmethionine enzymes.
Chem Rev. 2014 Apr 23;114(8):4229-317. doi: 10.1021/cr4004709. Epub 2014 Jan 29.
9
The HydG enzyme generates an Fe(CO)2(CN) synthon in assembly of the FeFe hydrogenase H-cluster.
Science. 2014 Jan 24;343(6169):424-7. doi: 10.1126/science.1246572.
10
Biochemical and kinetic characterization of radical S-adenosyl-L-methionine enzyme HydG.
Biochemistry. 2013 Dec 3;52(48):8696-707. doi: 10.1021/bi401143s. Epub 2013 Nov 20.

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