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评估水平传播在不同选择条件下对质粒稳定性的影响。

Evaluating the effect of horizontal transmission on the stability of plasmids under different selection regimes.

作者信息

Peña-Miller Rafael, Rodríguez-González Rogelio, MacLean R Craig, San Millan Alvaro

机构信息

Centro de Ciencias Genómicas; Universidad Nacional Autónoma de México ; Cuernavaca, Morelos, México.

Department of Zoology; University of Oxford ; Oxford, UK.

出版信息

Mob Genet Elements. 2015 May 21;5(3):1-5. doi: 10.1080/2159256X.2015.1045115. eCollection 2015 May-Jun.

Abstract

In theory, plasmids can only be maintained in a population when the rate of horizontal gene transfer is larger than the combined effect of segregational loss and the decrease of fitness associated with plasmid carriage. Recent advances in genome sequencing have shown, however, that a large fraction of plasmids do not carry the genes necessary for conjugation or mobilization. So, how are so-called non-transmissible plasmids able to persist? In order to address this question, we examined a previously published evolutionary model based on the interaction between and the non-transmissible plasmid pNUK73. Both our and in vitro results demonstrated that, although compensatory adaptation can decrease the rate of plasmid decay, the conditions for the maintenance of a non-transmissible plasmid are very stringent if the genes it carries are not beneficial to the bacterial host. This result suggests that apparently non-transmissible plasmids may still experience episodes of horizontal gene transfer occurring at very low frequencies, and that these scattered transmission events are sufficient to stabilize these plasmids. We conclude by discussing different genomic and microbiological approaches that could allow for the detection of these rare transmission events and thus to obtain a reliable estimate of the rate of horizontal gene transfer.

摘要

从理论上讲,只有当水平基因转移的速率大于分离丢失以及与质粒携带相关的适应性降低的综合影响时,质粒才能在群体中得以维持。然而,基因组测序的最新进展表明,很大一部分质粒并不携带接合或转移所需的基因。那么,所谓的非传递性质粒是如何能够持续存在的呢?为了解决这个问题,我们研究了一个先前发表的基于[具体内容缺失]与非传递性质粒pNUK73之间相互作用的进化模型。我们的[具体内容缺失]和体外实验结果均表明,尽管补偿性适应可以降低质粒衰减的速率,但如果非传递性质粒携带的基因对细菌宿主没有益处,那么维持该质粒的条件就会非常苛刻。这一结果表明,看似非传递性质粒可能仍会经历极低频率发生的水平基因转移事件,并且这些分散的转移事件足以使这些质粒稳定下来。我们通过讨论不同的基因组学和微生物学方法来结束本文,这些方法可以检测到这些罕见的转移事件,从而获得水平基因转移速率的可靠估计。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2940/4588171/09310da5234b/kmge-05-03-1045115-g001.jpg

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