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生物电记忆:两栖类胚胎和哺乳动物细胞静息电位双稳态建模

Bioelectric memory: modeling resting potential bistability in amphibian embryos and mammalian cells.

作者信息

Law Robert, Levin Michael

机构信息

Department of Neuroscience, Brown University, Box G, Providence, RI, 02912, USA.

Department of Biology and Tufts Center for Regenerative and Developmental Biology, Tufts University, 200 Boston Avenue, Medford, MA, 02155, USA.

出版信息

Theor Biol Med Model. 2015 Oct 15;12:22. doi: 10.1186/s12976-015-0019-9.

Abstract

BACKGROUND

Bioelectric gradients among all cells, not just within excitable nerve and muscle, play instructive roles in developmental and regenerative pattern formation. Plasma membrane resting potential gradients regulate cell behaviors by regulating downstream transcriptional and epigenetic events. Unlike neurons, which fire rapidly and typically return to the same polarized state, developmental bioelectric signaling involves many cell types stably maintaining various levels of resting potential during morphogenetic events. It is important to begin to quantitatively model the stability of bioelectric states in cells, to understand computation and pattern maintenance during regeneration and remodeling.

METHOD

To facilitate the analysis of endogenous bioelectric signaling and the exploitation of voltage-based cellular controls in synthetic bioengineering applications, we sought to understand the conditions under which somatic cells can stably maintain distinct resting potential values (a type of state memory). Using the Channelpedia ion channel database, we generated an array of amphibian oocyte and mammalian membrane models for voltage evolution. These models were analyzed and searched, by simulation, for a simple dynamical property, multistability, which forms a type of voltage memory.

RESULTS

We find that typical mammalian models and amphibian oocyte models exhibit bistability when expressing different ion channel subsets, with either persistent sodium or inward-rectifying potassium, respectively, playing a facilitative role in bistable memory formation. We illustrate this difference using fast sodium channel dynamics for which a comprehensive theory exists, where the same model exhibits bistability under mammalian conditions but not amphibian conditions. In amphibians, potassium channels from the Kv1.x and Kv2.x families tend to disrupt this bistable memory formation. We also identify some common principles under which physiological memory emerges, which suggest specific strategies for implementing memories in bioengineering contexts.

CONCLUSION

Our results reveal conditions under which cells can stably maintain one of several resting voltage potential values. These models suggest testable predictions for experiments in developmental bioelectricity, and illustrate how cells can be used as versatile physiological memory elements in synthetic biology, and unconventional computation contexts.

摘要

背景

所有细胞之间的生物电梯度,而不仅仅是可兴奋的神经和肌肉细胞内的生物电梯度,在发育和再生模式形成中发挥指导作用。质膜静息电位梯度通过调节下游转录和表观遗传事件来调节细胞行为。与神经元不同,神经元快速放电并通常回到相同的极化状态,发育生物电信号涉及许多细胞类型在形态发生事件期间稳定地维持各种静息电位水平。开始对细胞中生物电状态的稳定性进行定量建模,以了解再生和重塑过程中的计算和模式维持,这一点很重要。

方法

为了便于分析内源性生物电信号以及在合成生物工程应用中利用基于电压的细胞控制,我们试图了解体细胞能够稳定维持不同静息电位值(一种状态记忆)的条件。使用通道百科离子通道数据库,我们生成了一系列用于电压演变的两栖类卵母细胞和哺乳动物膜模型。通过模拟对这些模型进行分析和搜索,以寻找一种简单的动力学特性——多稳态,它构成了一种电压记忆。

结果

我们发现,典型的哺乳动物模型和两栖类卵母细胞模型在表达不同的离子通道亚群时表现出双稳态,分别是持续性钠通道或内向整流钾通道在双稳态记忆形成中起促进作用。我们使用存在全面理论的快速钠通道动力学来说明这种差异,其中相同的模型在哺乳动物条件下表现出双稳态,而在两栖类条件下则不然。在两栖类中,来自Kv1.x和Kv2.x家族的钾通道往往会破坏这种双稳态记忆形成。我们还确定了生理记忆出现的一些共同原则,这为在生物工程背景下实现记忆提出了具体策略。

结论

我们的结果揭示了细胞能够稳定维持几种静息电压电位值之一的条件。这些模型为发育生物电实验提供了可测试的预测,并说明了细胞如何在合成生物学和非常规计算背景下用作通用的生理记忆元件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b78d/4608135/ec4ecfcbbdbe/12976_2015_19_Fig1_HTML.jpg

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