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宽吻海豚(Tursiops truncatus)外周血样本中用于定量逆转录聚合酶链反应标准化的合适内参基因的选择。

Selection of suitable reference genes for normalization of quantitative RT-PCR in peripheral blood samples of bottlenose dolphins (Tursiops truncatus).

作者信息

Chen I-Hua, Chou Lien-Siang, Chou Shih-Jen, Wang Jiann-Hsiung, Stott Jeffrey, Blanchard Myra, Jen I-Fan, Yang Wei-Cheng

机构信息

Department of Veterinary Medicine, National Chiayi University, Chiayi, 600, Taiwan (R.O.C.).

Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei, 106, Taiwan (R.O.C.).

出版信息

Sci Rep. 2015 Oct 21;5:15425. doi: 10.1038/srep15425.

Abstract

Quantitative RT-PCR is often used as a research tool directed at gene transcription. Selection of optimal housekeeping genes (HKGs) as reference genes is critical to establishing sensitive and reproducible qRT-PCR-based assays. The current study was designed to identify the appropriate reference genes in blood leukocytes of bottlenose dolphins (Tursiops truncatus) for gene transcription research. Seventy-five blood samples collected from 7 bottlenose dolphins were used to analyze 15 candidate HKGs (ACTB, B2M, GAPDH, HPRT1, LDHB, PGK1, RPL4, RPL8, RPL18, RPS9, RPS18, TFRC, YWHAZ, LDHA, SDHA). HKG stability in qRT-PCR was determined using geNorm, NormFinder, BestKeeper and comparative delta Ct algorithms. Utilization of RefFinder, which combined all 4 algorithms, suggested that PGK1, HPRT1 and RPL4 were the most stable HKGs in bottlenose dolphin blood. Gene transcription perturbations in blood can serve as an indication of health status in cetaceans as it occurs prior to alterations in hematology and chemistry. This study identified HKGs that could be used in gene transcript studies, which may contribute to further mRNA relative quantification research in the peripheral blood leukocytes in captive cetaceans.

摘要

定量逆转录聚合酶链反应(Quantitative RT-PCR)常被用作针对基因转录的研究工具。选择最佳管家基因(HKGs)作为参考基因对于建立基于qRT-PCR的灵敏且可重复的检测方法至关重要。本研究旨在鉴定宽吻海豚(Tursiops truncatus)血液白细胞中适合用于基因转录研究的参考基因。从7只宽吻海豚采集的75份血液样本用于分析15个候选管家基因(ACTB、B2M、GAPDH、HPRT1、LDHB、PGK1、RPL4、RPL8、RPL18、RPS9、RPS18、TFRC、YWHAZ、LDHA、SDHA)。使用geNorm、NormFinder、BestKeeper和比较ΔCt算法确定qRT-PCR中管家基因的稳定性。结合所有4种算法的RefFinder分析表明,PGK1、HPRT1和RPL4是宽吻海豚血液中最稳定的管家基因。血液中的基因转录扰动可作为鲸类健康状况的指标,因为它发生在血液学和化学变化之前。本研究鉴定出可用于基因转录研究的管家基因,这可能有助于圈养鲸类外周血白细胞中进一步的mRNA相对定量研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf22/4614023/d4fc130b6bd8/srep15425-f1.jpg

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