Song David Y, Pizano Arturo A, Holder Patrick G, Stubbe JoAnne, Nocera Daniel G
Department of Chemistry and Chemical Biology, 12 Oxford Street, Cambridge, MA 02138-2902.
Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139-4307.
Chem Sci. 2015 Aug 1;6(8):4519-4524. doi: 10.1039/C5SC01125F. Epub 2015 Jun 8.
Proton-coupled electron transfer (PCET) is a fundamental mechanism important in a wide range of biological processes including the universal reaction catalysed by ribonucleotide reductases (RNRs) in making de novo, the building blocks required for DNA replication and repair. These enzymes catalyse the conversion of nucleoside diphosphates (NDPs) to deoxynucleoside diphosphates (dNDPs). In the class Ia RNRs, NDP reduction involves a tyrosyl radical mediated oxidation occurring over 35 Å across the interface of the two required subunits (β and α) involving multiple PCET steps and the conserved tyrosine triad [Y(β)-Y(α)-Y(α)]. We report the synthesis of an active photochemical RNR (photoRNR) complex in which a Re(I)-tricarbonyl phenanthroline ([Re]) photooxidant is attached site-specifically to the Cys in the YC-(β) subunit and an ionizable, 2,3,5-trifluorotyrosine (2,3,5-FY) is incorporated in place of Y in α. This intersubunit PCET pathway is investigated by ns laser spectroscopy on [Re]-β:2,3,5-FY-α in the presence of substrate, CDP, and effector, ATP. This experiment has allowed analysis of the photoinjection of a radical into α from β in the absence of the interfacial Y residue. The system is competent for light-dependent substrate turnover. Time-resolved emission experiments reveal an intimate dependence of the rate of radical injection on the protonation state at position Y(α), which in turn highlights the importance of a well-coordinated proton exit channel involving the key residues, Y and Y, at the subunit interface.
质子耦合电子转移(PCET)是一种基本机制,在广泛的生物过程中具有重要意义,包括核糖核苷酸还原酶(RNRs)催化的通用反应,该反应产生DNA复制和修复所需的从头合成的构建块。这些酶催化核苷二磷酸(NDPs)转化为脱氧核苷二磷酸(dNDPs)。在Ia类RNRs中,NDP还原涉及酪氨酸自由基介导的氧化反应,该反应在两个必需亚基(β和α)的界面上跨越35 Å发生,涉及多个PCET步骤和保守的酪氨酸三联体[Y(β)-Y(α)-Y(α)]。我们报道了一种活性光化学RNR(photoRNR)复合物的合成,其中Re(I)-三羰基菲咯啉([Re])光氧化剂位点特异性地连接到YC-(β)亚基中的半胱氨酸上,并且在α中用可电离的2,3,5-三氟酪氨酸(2,3,5-FY)取代Y。通过ns激光光谱在底物CDP和效应物ATP存在的情况下对[Re]-β:2,3,5-FY-α研究了这种亚基间PCET途径。该实验允许在没有界面Y残基的情况下分析自由基从β向α的光注入。该系统能够进行光依赖的底物周转。时间分辨发射实验揭示了自由基注入速率对Y(α)位置质子化状态的密切依赖性,这反过来突出了涉及亚基界面处关键残基Y和Y的协调良好的质子出口通道的重要性。