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利用下一代测序技术进行 Pi65(t)的遗传图谱定位和分子标记开发,Pi65(t)是一个新的广谱抗稻瘟病基因。

Genetic mapping and molecular marker development for Pi65(t), a novel broad-spectrum resistance gene to rice blast using next-generation sequencing.

机构信息

Crops Molecular Improvement Laboratory, Liaoning Innovation Center of the Academy of Agricultural Sciences, 84 Dongling Road, Shenyang, 110161, China.

Plant Protection College, Shenyang Agricultural University, 120 Dongling Road, Shenyang, 110161, China.

出版信息

Theor Appl Genet. 2016 May;129(5):1035-44. doi: 10.1007/s00122-016-2681-7. Epub 2016 Feb 16.

Abstract

A novel R gene was mapped to a locus on chromosome 11 from 30.42 to 30.85 Mb, which was proven to be efficient in the improvement of rice blast resistance. Rice blast is a devastating fungal disease worldwide. The use of blast resistance (R) genes is the most important approach to control the disease in rice breeding. In the present study, we finely mapped a novel resistance gene Pi65(t), conferring a broad-spectrum resistance to the fungus Magnaporthe oryzae, using bulked segregant analysis in combination with next-generation sequencing technology. Segregation in a doubled haploid (DH) population and a BC1F2 population suggested that resistance to blast in Gangyu129 was likely conferred by a single dominant gene, designated Pi65(t); it was located on chromosome 11 from 30.20 to 31.20 Mb using next-generation sequencing. After screening recombinants with newly developed molecular markers, the region was narrowed down to 0.43 Mb, flanked by SNP-2 and SNP-8 at the physical location from 30.42 to 30.85 Mb based on the Nipponbare reference database in build 5. Using the software QTL IciMapping, Pi65(t) was further mapped to a locus between InDel-1 and SNP-4 with genetic distances of 0.11 and 0.98 cM, respectively. Within this region, 4 predicted R genes were found with nucleotide binding site and leucine-rich repeat (NBS-LRR) domains. We developed molecular markers to genotype 305 DH lines and found that InDel-1 was closely linked with Pi65(t). Using InDel-1, a new rice variety Chuangxin1 containing Pi65(t) was developed, and it is highly resistant to rice blast and produces a high yield in Liaoning province of China. This indicated that Pi65(t) could play a key role in the improvement of rice blast resistance.

摘要

一个新的 R 基因被定位到 11 号染色体上 30.42 到 30.85Mb 的一个位置,该基因被证明在提高水稻对稻瘟病的抗性方面非常有效。稻瘟病是一种世界性的破坏性真菌病害。在水稻育种中,利用抗病(R)基因是控制该病害最重要的方法。本研究利用 bulked segregant analysis 结合下一代测序技术,精细定位了一个新的抗病基因 Pi65(t),该基因赋予水稻广谱抗稻瘟病。在加倍单倍体(DH)群体和 BC1F2 群体中的分离表明,Gangyu129 的抗稻瘟病可能由一个显性单基因 Pi65(t) 控制;该基因利用下一代测序技术被定位在 11 号染色体上 30.20 到 31.20Mb 之间。利用新开发的分子标记筛选重组体后,将该区域缩小到 0.43Mb,该区域在物理位置上位于 SNP-2 和 SNP-8 之间,物理位置在基于 Nipponbare 参考数据库构建 5 中的 30.42 到 30.85Mb 之间。利用软件 QTL IciMapping,Pi65(t) 进一步被定位到 InDel-1 和 SNP-4 之间的一个位点,遗传距离分别为 0.11 和 0.98cM。在这个区域内,发现了 4 个预测的 R 基因,具有核苷酸结合位点和富含亮氨酸重复(NBS-LRR)结构域。我们开发了分子标记来对 305 个 DH 系进行基因型分析,发现 InDel-1 与 Pi65(t) 紧密连锁。利用 InDel-1,开发了一个含有 Pi65(t) 的新水稻品种创信 1 号,该品种对稻瘟病具有高度抗性,在中国辽宁省产量很高。这表明 Pi65(t) 在提高水稻对稻瘟病的抗性方面可能发挥关键作用。

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