Stone Bram W G, Jackson Colin R
Department of Biology, University of Mississippi, Shoemaker Hall, University MS, P.O. Box 1848, Oxford, MS, 38677, USA.
Microb Ecol. 2016 May;71(4):954-61. doi: 10.1007/s00248-016-0738-4. Epub 2016 Feb 16.
The phyllosphere presents a unique system of discrete and easily replicable surfaces colonized primarily by bacteria. However, the biogeography of bacteria in the phyllosphere is little understood, especially at small to intermediate scales. Bacterial communities on the leaves of 91 southern magnolia (Magnolia grandiflora) trees 1-452 m apart in a small forest plot were analyzed and fragments of the 16S ribosomal RNA (rRNA) gene sequenced using the Illumina platform. Assemblages were dominated by members of the Alphaproteobacteria, Bacteroidetes, and Acidobacteria. Patterns in community composition were measured by both relative abundance (theta) and presence-absence (Jaccard) dissimilarity metrics. Distance-based Moran's eigenvector map analyses of the distance-decay relationship found a significant, positive relationship between each dissimilarity metric and significant eigenfunctions derived from geographic distance between trees, indicating trees that were closer together had more similar bacterial phyllosphere communities. Indirect gradient analyses revealed that several environmental parameters (canopy cover, tree elevation, and the slope and aspect of the ground beneath trees) were significantly related to multivariate ordination scores based on relative bacterial sequence abundances; however, these relationships were not significant when looking at the incidence of bacterial taxa. This suggests that bacterial growth and abundance in the phyllosphere is shaped by different assembly mechanisms than bacterial presence or absence. More broadly, this study demonstrates that the distance-decay relationship applies to phyllosphere communities at local scales, and that environmental parameters as well as neutral forces may both influence spatial patterns in the phyllosphere.
叶际呈现出一个独特的系统,其离散且易于复制的表面主要被细菌定殖。然而,人们对叶际细菌的生物地理学了解甚少,尤其是在小尺度到中等尺度上。在一个小森林地块中,对相距1 - 452米的91棵广玉兰(Magnolia grandiflora)树的叶片上的细菌群落进行了分析,并使用Illumina平台对16S核糖体RNA(rRNA)基因片段进行了测序。群落主要由α-变形菌纲、拟杆菌门和酸杆菌门的成员主导。通过相对丰度(θ)和存在-缺失(Jaccard)差异度量来衡量群落组成模式。基于距离的莫兰特征向量地图分析距离衰减关系发现,每个差异度量与从树木之间的地理距离导出的显著特征函数之间存在显著的正相关关系,这表明距离较近的树木具有更相似的叶际细菌群落。间接梯度分析表明,几个环境参数(树冠覆盖度、树高以及树下地面的坡度和坡向)与基于细菌序列相对丰度的多变量排序得分显著相关;然而,从细菌分类单元的发生率来看,这些关系并不显著。这表明叶际中细菌的生长和丰度是由与细菌存在与否不同的组装机制塑造的。更广泛地说,这项研究表明距离衰减关系适用于局部尺度的叶际群落,并且环境参数以及中性力量可能都会影响叶际中的空间模式。