舒氏气单胞菌模式菌株ATCC 43700的全基因组序列

Complete Genome Sequence of the Type Strain of Aeromonas schubertii, ATCC 43700.

作者信息

Liu Lihui, Li Ningqiu, Zhang Defeng, Fu Xiaozhe, Shi Cunbin, Lin Qiang

机构信息

Key Laboratory of Fishery Drug Development, Ministry of Agriculture Key Laboratory of Aquatic Animal Immune Technology, Pearl River Fishery Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, Guangdong, China Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan, Hubei, China.

Key Laboratory of Fishery Drug Development, Ministry of Agriculture Key Laboratory of Aquatic Animal Immune Technology, Pearl River Fishery Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, Guangdong, China Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan, Hubei, China

出版信息

Genome Announc. 2016 Feb 18;4(1):e00012-16. doi: 10.1128/genomeA.00012-16.

DOI:10.1128/genomeA.00012-16

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4759060/

Abstract

We sequenced the complete genome of the type strain of Aeromonas schubertii, ATCC 43700. The full genome sequence of A. schubertii ATCC 43700 is 4,356,858 bp, which encodes 3,842 proteins and contains 110 predicted RNA genes.

摘要

我们对舒氏气单胞菌模式菌株ATCC 43700的全基因组进行了测序。舒氏气单胞菌ATCC 43700的全基因组序列为4,356,858碱基对，编码3,842种蛋白质，并包含110个预测的RNA基因。

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本文引用的文献

1

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.

2

SignalP 4.0: discriminating signal peptides from transmembrane regions.

Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701.

3

Rfam: updates to the RNA families database.

Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40. doi: 10.1093/nar/gkn766. Epub 2008 Oct 25.

4

RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.

5

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.

6

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.

7

Aeromonas schubertii, a new mannitol-negative species found in human clinical specimens.

J Clin Microbiol. 1988 Aug;26(8):1561-4. doi: 10.1128/jcm.26.8.1561-1564.1988.

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