肺炎克雷伯菌IIEMP-3的基因组序列，一株源自印度尼西亚丹贝的维生素B12产生菌。
Genomic Sequence of Klebsiella pneumoniae IIEMP-3, a Vitamin B12-Producing Strain from Indonesian Tempeh.
作者信息
Yulandi Adi, Sugiokto Febri Gunawan, Suwanto Antonius
机构信息
Faculty of Biotechnology, Atma Jaya Catholic University of Indonesia, Jakarta, Indonesia.
Faculty of Biotechnology, Atma Jaya Catholic University of Indonesia, Jakarta, Indonesia Department of Biology, Faculty of Science and Mathematics, Bogor Agricultural University, Bogor, Indonesia
出版信息
Genome Announc. 2016 Feb 25;4(1):e01724-15. doi: 10.1128/genomeA.01724-15.
Abstract
Klebsiella pneumoniae strain IIEMP-3, isolated from Indonesian tempeh, is a vitamin B12-producing strain that exhibited a different genetic profile from pathogenic isolates. Here we report the draft genome sequence of strain IIEMP-3, which may provide insights on the nature of fermentation, nutrition, and immunological function of Indonesian tempeh.
摘要
从印度尼西亚豆豉中分离出的肺炎克雷伯菌IIEMP-3菌株是一种能产生维生素B12的菌株，其基因图谱与致病性分离株不同。在此，我们报告IIEMP-3菌株的基因组草图序列，这可能为了解印度尼西亚豆豉的发酵特性、营养成分和免疫功能提供线索。
相似文献
1
Genomic Sequence of Klebsiella pneumoniae IIEMP-3, a Vitamin B12-Producing Strain from Indonesian Tempeh.肺炎克雷伯菌IIEMP-3的基因组序列，一株源自印度尼西亚丹贝的维生素B12产生菌。
Genome Announc. 2016 Feb 25;4(1):e01724-15. doi: 10.1128/genomeA.01724-15.
2
Vitamin B12 production by Citrobacter freundii or Klebsiella pneumoniae during tempeh fermentation and proof of enterotoxin absence by PCR.弗氏柠檬酸杆菌或肺炎克雷伯菌在印尼豆豉发酵过程中产生维生素B12以及通过聚合酶链反应证明不存在肠毒素
Appl Environ Microbiol. 1994 May;60(5):1495-9. doi: 10.1128/aem.60.5.1495-1499.1994.
3
Enhanced vitamin B12 production in an innovative lupin tempeh is due to synergic effects of Rhizopus and Propionibacterium in cofermentation.协同发酵中根霉和丙酸杆菌的协同作用导致新型羽扇豆豆豉中维生素 B12 的产量增加。
Int J Food Sci Nutr. 2018 Jun;69(4):451-457. doi: 10.1080/09637486.2017.1386627. Epub 2017 Oct 18.
4
The source and content of vitamin B12 in the tempehs.
J Med Assoc Thai. 1990 Mar;73(3):152-6.
5
Nutritional Content and Characteristics of Pumpkin Cream Soup with Tempeh Addition as Supplementary Food for Elderly.添加丹贝的南瓜奶油汤作为老年人补充食品的营养成分及特性
Int J Food Sci. 2021 Aug 16;2021:6976357. doi: 10.1155/2021/6976357. eCollection 2021.
6
Formation of Zearalenone Metabolites in Tempeh Fermentation.黄曲霉毒素代谢物在豆豉发酵中的形成。
Molecules. 2019 Jul 24;24(15):2697. doi: 10.3390/molecules24152697.
7
Biosynthesis of poly(3-hydroxypropionate) from glycerol using engineered Klebsiella pneumoniae strain without vitamin B12.使用不含维生素B12的工程化肺炎克雷伯菌菌株从甘油生物合成聚（3-羟基丙酸酯）。
Bioengineered. 2015;6(2):77-81. doi: 10.1080/21655979.2015.1011027.
8
Formation of vitamins by pure cultures of tempe moulds and bacteria during the tempe solid substrate fermentation.在丹贝固体基质发酵过程中，由丹贝霉菌和细菌的纯培养物合成维生素。
J Appl Bacteriol. 1993 Nov;75(5):427-34. doi: 10.1111/j.1365-2672.1993.tb02798.x.
9
Draft genome sequence of a CTX-M-15-producing Klebsiella pneumoniae sequence type 340 (clonal complex 258) isolate from a food-producing animal.产 CTX-M-15 肺炎克雷伯菌 340 型（克隆复合体 258）食源性动物分离株的基因组草图序列
J Glob Antimicrob Resist. 2016 Dec;7:67-68. doi: 10.1016/j.jgar.2016.07.012. Epub 2016 Sep 12.
10
Effect of controlled lactic acid fermentation on selected bioactive and nutritional parameters of tempeh obtained from unhulled common bean (Phaseolus vulgaris) seeds.未去皮普通豆（Phaseolus vulgaris）种子制备的豆豉经控乳酸发酵对选定生物活性和营养参数的影响。
J Sci Food Agric. 2014 Jan 30;94(2):359-66. doi: 10.1002/jsfa.6385. Epub 2013 Oct 13.
引用本文的文献
1
Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. shotgun 宏基因组分析揭示了豆豉中细菌群落特征的新见解。
BMC Res Notes. 2020 Dec 11;13(1):562. doi: 10.1186/s13104-020-05406-6.
本文引用的文献
1
Tempe, a nutritious and healthy food from Indonesia.丹贝，一种来自印度尼西亚的营养健康食品。
Asia Pac J Clin Nutr. 2000 Dec;9(4):322-5. doi: 10.1046/j.1440-6047.2000.00176.x.
2
REAPR: a universal tool for genome assembly evaluation.REAPR：一种用于基因组组装评估的通用工具。
Genome Biol. 2013 May 27;14(5):R47. doi: 10.1186/gb-2013-14-5-r47.
3
A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs.一种用于从连续片段中获得带注释基因组的后组装基因组改进工具包（PAGIT）。
Nat Protoc. 2012 Jun 7;7(7):1260-84. doi: 10.1038/nprot.2012.068.
4
Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
5
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
6
Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors.克雷伯菌属作为医院病原体：流行病学、分类学、分型方法及致病因素
Clin Microbiol Rev. 1998 Oct;11(4):589-603. doi: 10.1128/CMR.11.4.589.
7
Primary liver abscess due to Klebsiella pneumoniae in Taiwan.台湾地区肺炎克雷伯菌所致原发性肝脓肿
Clin Infect Dis. 1998 Jun;26(6):1434-8. doi: 10.1086/516369.
8
Comparison of pulsed-field gel electrophoresis and randomly amplified DNA polymorphism analysis for typing extended-spectrum-beta-lactamase-producing Klebsiella pneumoniae.脉冲场凝胶电泳和随机扩增多态性DNA分析用于产超广谱β-内酰胺酶肺炎克雷伯菌分型的比较
J Clin Microbiol. 1996 Oct;34(10):2448-53. doi: 10.1128/jcm.34.10.2448-2453.1996.
9
Formation of vitamins by pure cultures of tempe moulds and bacteria during the tempe solid substrate fermentation.在丹贝固体基质发酵过程中，由丹贝霉菌和细菌的纯培养物合成维生素。
J Appl Bacteriol. 1993 Nov;75(5):427-34. doi: 10.1111/j.1365-2672.1993.tb02798.x.
10
Production of vitamin B-12 in tempeh, a fermented soybean food.在豆豉（一种发酵大豆食品）中维生素B-12的产生。
Appl Environ Microbiol. 1977 Dec;34(6):773-6. doi: 10.1128/aem.34.6.773-776.1977.
Zotero 插件