Rahman Hafizur, Yang Juan, Xu You-Ping, Munyampundu Jean-Pierre, Cai Xin-Zhong
Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University Hangzhou, China.
Center of Analysis and Measurement, Zhejiang University Hangzhou, China.
Front Plant Sci. 2016 Feb 29;7:177. doi: 10.3389/fpls.2016.00177. eCollection 2016.
Calmodulin-binding transcription activator (CAMTA) constitutes one of the most important Ca(2+)/CaM-regulated transcription factor families in plants. Nevertheless, the phylogeny, protein interaction network, and role in nonhost resistance of plant CAMTAs are not well understood. In this study, 200 CAMTA genes were identified from 35 species representing four major plant lineages. The CAMTA genes were conserved in multicellular land plants but absent in unicellular eukaryotes, and were likely to emerge from the fusion of two separate genes encoding a CAMTA-like protein and an IQ/CaM binding motif containing protein, respectively, in the embryophyta lineage ancestor. Approximately one fourth of plant CAMTAs did not contain a TIG domain. This non-TIG class of CAMTAs seems to have newly evolved through mutation of some key amino acids in the TIG domain of flowering land plants after divergence from the non-flowering plants. Phylogenetic analysis classified CAMTA proteins into three major groups and nine distinct subgroups, a result supported by protein domain and motif conservation analyses. Most (59.0 and 21.5%) of the identified CAMTA genes contained 12 or 11 introns, respectively. Gene duplication, intron invasion, enlargement and turnover, as well as exon rearrangements and skipping have apparently occurred during evolution of the CAMTA family. Moreover, 38 potential interactors of six Arabidopsis CAMTAs were predicted and 10 predicted target genes of AtCAMTA3 exhibited changes in expression between Atcamta3 mutants and wild-type plants. The majority of predicted interactors are transcription factors and/or Ca(2+)/CaM-regulated proteins, suggesting that transcriptional regulation of the target genes might be the dominant functional mechanism of AtCAMTAs, and AtCAMTAs might act together with other Ca(2+) signaling components to regulate Ca(2+)-related biological processes. Furthermore, functional analyses employing Atcamta mutants revealed that AtCAMTA3 negatively regulated the immunity triggered by flg22 and nonhost resistance to Xanthomonas oryzae pv. oryzae via repressing accumulation of reactive oxygen species probably by targeting CBP60G, EDS1, and NDR1 and involving SA pathway.
钙调蛋白结合转录激活因子(CAMTA)是植物中最重要的Ca(2+)/CaM调节转录因子家族之一。然而,植物CAMTA的系统发育、蛋白质相互作用网络及其在非寄主抗性中的作用尚未得到充分了解。在本研究中,从代表四个主要植物谱系的35个物种中鉴定出200个CAMTA基因。CAMTA基因在多细胞陆生植物中保守,但在单细胞真核生物中不存在,并且可能是在胚植物谱系祖先中分别由编码类CAMTA蛋白和含IQ/CaM结合基序蛋白的两个独立基因融合产生的。大约四分之一的植物CAMTA不包含TIG结构域。这种非TIG类CAMTA似乎是在与非开花植物分化后,通过开花陆生植物TIG结构域中一些关键氨基酸的突变而新进化出来的。系统发育分析将CAMTA蛋白分为三个主要组和九个不同的亚组,这一结果得到了蛋白质结构域和基序保守性分析的支持。大多数(分别为59.0%和21.5%)鉴定出的CAMTA基因分别含有12个或11个内含子。在CAMTA家族的进化过程中显然发生了基因复制、内含子入侵、扩大和周转,以及外显子重排和跳跃。此外,预测了六个拟南芥CAMTA的38个潜在相互作用蛋白,并且AtCAMTA3的10个预测靶基因在Atcamta3突变体和野生型植物之间表现出表达变化。大多数预测的相互作用蛋白是转录因子和/或Ca(2+)/CaM调节蛋白,这表明靶基因的转录调控可能是AtCAMTA的主要功能机制,并且AtCAMTA可能与其他Ca(2+)信号成分共同作用来调节Ca(2+)相关的生物学过程。此外,使用Atcamta突变体的功能分析表明,AtCAMTA3通过可能靶向CBP60G、EDS1和NDR1并涉及SA途径来抑制活性氧的积累,从而负向调节flg22触发的免疫和对水稻白叶枯病菌的非寄主抗性。