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与局部晚期非小细胞肺癌患者放疗诱导毒性相关的微小RNA相关基因变异

MiRNA-Related Genetic Variations Associated with Radiotherapy-Induced Toxicities in Patients with Locally Advanced Non-Small Cell Lung Cancer.

作者信息

Li Rong, Pu Xia, Chang Joe Y, Ye Yuanqing, Komaki Ritsuko, Minna John D, Roth Jack A, Han Baohui, Wu Xifeng

机构信息

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

Department of Pulmonary Medicine, Shanghai Chest Hospital, Shanghai Jiao Tong University, West Huaihai Road 241, Shanghai, China.

出版信息

PLoS One. 2016 Mar 18;11(3):e0150467. doi: 10.1371/journal.pone.0150467. eCollection 2016.

Abstract

Severe radiation-induced toxicities limit treatment efficacy and compromise outcomes of lung cancer. We aimed to identify microRNA-related genetic variations as biomarkers for the prediction of radiotherapy-induced acute toxicities. We genotyped 233 SNPs (161 in microRNA binding site and 72 in processing gene) and analyzed their associations with pneumonitis and esophagitis in 167 stage III NSCLC patients received definitive radiation therapy. Sixteen and 11 SNPs were associated with esophagitis and pneumonitis, respectively. After multiple comparison correction, RPS6KB2:rs10274, SMO:rs1061280, SMO:rs1061285 remained significantly associated with esophagitis, while processing gene DGCR8:rs720014, DGCR8:rs3757, DGCR8:rs1633445 remained significantly associated with pneumonitis. Patients with the AA genotype of RPS6KB2:rs10274 had an 81% reduced risk of developing esophagitis (OR: 0.19, 95% CI: 0.07-0.51, p = 0.001, q = 0.06). Patients with the AG+GG genotype of SMO:rs1061280 had an 81% reduced risk of developing esophagitis (OR: 0.19, 95% CI: 0.07-0.53, p = 0.001, q = 0.06). Patients with the GG+GA genotype of DGCR8:rs720014 had a 3.54-fold increased risk of pneumonitis (OR: 3.54, 95% CI: 1.65-7.61, p <0.05, q <0.1). Significantly cumulative effects of the top SNPs were observed for both toxicities (P-trend <0.001). Using bioinformatics tools, we found that the genotype of rs10274 was associated with altered expression of the RPS6KB2 gene. Gene-based analysis showed DGCR8 (p = 0.010) and GEMIN4 (p = 0.039) were the top genes associated with the risk of developing pneumonitis. Our results provide strong evidence that microRNA-related genetic variations contribute to the development of radiotherapy-induced acute esophagitis and pneumonitis and could thus serve as biomarkers to help accurately predict radiotherapy-induced toxicity in NSCLC patients.

摘要

严重的辐射诱导毒性限制了肺癌的治疗效果并影响其预后。我们旨在鉴定与微小RNA相关的基因变异作为预测放疗诱导急性毒性的生物标志物。我们对233个单核苷酸多态性(SNP)进行基因分型(161个位于微小RNA结合位点,72个位于加工基因),并分析它们与167例接受根治性放疗的III期非小细胞肺癌(NSCLC)患者的肺炎和食管炎的相关性。分别有16个和11个SNP与食管炎和肺炎相关。经过多重比较校正后,RPS6KB2:rs10274、SMO:rs1061280、SMO:rs1061285仍与食管炎显著相关,而加工基因DGCR8:rs720014、DGCR8:rs3757、DGCR8:rs1633445仍与肺炎显著相关。RPS6KB2:rs10274的AA基因型患者发生食管炎的风险降低81%(比值比:0.19,95%置信区间:0.07 - 0.51,p = 0.001,q = 0.06)。SMO:rs1061280的AG + GG基因型患者发生食管炎的风险降低81%(比值比:0.19,95%置信区间:0.07 - 0.53,p = 0.001,q = 0.06)。DGCR8:rs720014的GG + GA基因型患者发生肺炎的风险增加3.54倍(比值比:3.54,95%置信区间:1.65 - 7.61,p <0.05,q <0.1)。两种毒性均观察到顶级SNP有显著的累积效应(P趋势<0.001)。使用生物信息学工具,我们发现rs10274的基因型与RPS6KB2基因表达改变有关。基于基因的分析显示DGCR8(p = 0.010)和GEMIN4(p = 0.039)是与发生肺炎风险相关的顶级基因。我们的结果提供了强有力的证据,表明与微小RNA相关的基因变异促成了放疗诱导的急性食管炎和肺炎的发生,因此可作为生物标志物来帮助准确预测NSCLC患者放疗诱导的毒性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9876/4798772/c664050b04b6/pone.0150467.g001.jpg

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