Dobritsa Anatoly P, Samadpour Mansour
Institute for Environmental Health, Inc, 15300 Bothell Way NE, Lake Forest Park, WA 98155, USA.
Int J Syst Evol Microbiol. 2016 Aug;66(8):2836-2846. doi: 10.1099/ijsem.0.001065. Epub 2016 Apr 7.
It has been proposed to split the genus Burkholderia into two genera according to phylogenetic clustering: (1) a genus retaining this name and consisting mainly of animal and plant pathogens and (2) the genus Paraburkholderia including so-called environmental bacteria. The latter genus name has been validly published recently. During the period between the effective and valid publications of the genus name Paraburkholderia, 16 novel species of the genus Burkholderiawere described, but only two of them can be classified as members of this genus based on the emended genus description. Analysis of traits and phylogenetic positions of the other 11 species shows that they belong to the genus Paraburkholderia, and we propose to transfer them to this genus. The reclassified species names are proposed as Paraburkholderia dipogonis comb. nov., Paraburkholderia ginsengiterrae comb. nov., Paraburkholderia humisilvae comb. nov., Paraburkholderia insulsa comb. nov., Paraburkholderia kirstenboschensis comb. nov., Paraburkholderia metalliresistens comb. nov., Paraburkholderia monticola comb. nov., Paraburkholderia panaciterrae comb. nov., Paraburkholderia rhizosphaerae comb. nov., Paraburkholderia solisilvae comb. nov. and Paraburkholderia susongensis comb. nov. The remaining three species are transferred to the new genus Caballeronia gen. nov. proposed to accommodate twelve species of the genera Burkholderia and Paraburkholderia forming a distinctive clade in phylogenetic trees. The new genus members are Caballeronia choica comb. nov., Caballeronia cordobensis comb. nov., Caballeronia glathei comb. nov., Caballeronia grimmiae comb. nov., Caballeronia humi comb. nov., Caballeronia megalochromosomata comb. nov., Caballeronia jiangsuensis comb. nov., Caballeronia sordidicola comb. nov., Caballeronia telluris comb. nov., Caballeronia terrestris comb. nov., Caballeronia udeis comb. nov., and Caballeronia zhejiangensis comb. nov.
(1)保留该名称的属,主要由动植物病原体组成;(2)副伯克霍尔德菌属,包括所谓的环境细菌。后一个属名最近已正式发表。在副伯克霍尔德菌属名称有效发表期间,描述了16个伯克霍尔德菌属新物种,但根据修订后的属描述,其中只有两个可归类为该属成员。对其他11个物种的特征和系统发育位置分析表明,它们属于副伯克霍尔德菌属,我们提议将它们转移到该属。重新分类后的物种名称提议为副伯克霍尔德菌属双穗雀稗新组合(Paraburkholderia dipogonis comb. nov.)、副伯克霍尔德菌属人参土新组合(Paraburkholderia ginsengiterrae comb. nov.)、副伯克霍尔德菌属腐殖林新组合(Paraburkholderia humisilvae comb. nov.)、副伯克霍尔德菌属海岛新组合(Paraburkholderia insulsa comb. nov.)、副伯克霍尔德菌属克里斯滕博斯新组合(Paraburkholderia kirstenboschensis comb. nov.)、副伯克霍尔德菌属抗金属新组合(Paraburkholderia metalliresistens comb. nov.)、副伯克霍尔德菌属山地新组合(Paraburkholderia monticola comb. nov.)、副伯克霍尔德菌属人参土新组合(Paraburkholderia panaciterrae comb. nov.)、副伯克霍尔德菌属根际球囊霉新组合(Paraburkholderia rhizosphaerae comb. nov.)、副伯克霍尔德菌属土壤林新组合(Paraburkholderia solisilvae comb. nov.)和副伯克霍尔德菌属宿松新组合(Paraburkholderia susongensis comb. nov.)。其余三个物种转移到新的卡瓦列罗尼亚属(Caballeronia gen. nov.),该属提议容纳伯克霍尔德菌属和副伯克霍尔德菌属的12个物种,它们在系统发育树中形成一个独特的分支。新属成员包括卡瓦列罗尼亚属乔伊卡新组合(Caballeronia choica comb. nov.)、卡瓦列罗尼亚属科尔多瓦新组合(Caballeronia cordobensis comb. nov.)、卡瓦列罗尼亚属格拉特新组合(Caballeronia glathei comb. nov.)、卡瓦列罗尼亚属格林米亚新组合(Caballeronia grimmiae comb. nov.)、卡瓦列罗尼亚属腐殖新组合(Caballeronia humi comb. nov.)、卡瓦列罗尼亚属巨染色体新组合(Caballeronia megalochromosomata comb. nov.)、卡瓦列罗尼亚属江苏新组合(Caballeronia jiangsuensis comb. nov.)、卡瓦列罗尼亚属污栖新组合(Caballeronia sordidicola comb. nov.)、卡瓦列罗尼亚属地新组合(Caballeronia telluris comb. nov.)、卡瓦列罗尼亚属地新组合(Caballeronia terrestris comb. nov.)、卡瓦列罗尼亚属乌迪斯新组合(Caballeronia udeis comb. nov.)和卡瓦列罗尼亚属浙江新组合(Caballeronia zhejiangensis comb. nov.)。