Ackerman David G, Feigenson Gerald W
Department of Molecular Biology and Genetics, Cornell University , Ithaca, New York 14853, United States.
J Phys Chem B. 2016 May 5;120(17):4064-77. doi: 10.1021/acs.jpcb.6b00611. Epub 2016 Apr 27.
We used coarse-grained molecular dynamics simulations to examine the effects of transmembrane α-helical WALP peptides on the behavior of four-component lipid mixtures. These mixtures contain a high-melting temperature (high-Tm) lipid, a nanodomain-inducing low-Tm lipid, a macrodomain-inducing low-Tm lipid and cholesterol to model the outer leaflet of cell plasma membranes. In a series of simulations, we incrementally replace the nanodomain-inducing low-Tm lipid by the macrodomain-inducing low-Tm lipid and measure how lipid and phase properties are altered by the addition of WALPs of different length. Regardless of the ratio of the two low-Tm lipids, shorter WALPs increase domain size and all WALPs increase domain alignment between the two leaflets. These effects are smallest for the longest WALP tested, and increase with increasing WALP concentration. Thus, our simulations explain the experimental observation that WALPs induce macroscopic domains in otherwise nanodomain-forming lipid-only mixtures (unpublished). Since the cell plasma membrane contains a large fraction of transmembrane proteins, these findings link the behavior of lipid-only model membranes in vitro to phase behavior in vivo.
我们使用粗粒度分子动力学模拟来研究跨膜α-螺旋WALP肽对四组分脂质混合物行为的影响。这些混合物包含一种高熔点温度(高Tm)脂质、一种诱导纳米结构域的低Tm脂质、一种诱导大结构域的低Tm脂质和胆固醇,以模拟细胞质膜的外小叶。在一系列模拟中,我们逐步用诱导大结构域的低Tm脂质替代诱导纳米结构域的低Tm脂质,并测量不同长度的WALP添加后脂质和相性质如何改变。无论两种低Tm脂质的比例如何,较短的WALP会增加结构域大小,并且所有WALP都会增加两个小叶之间的结构域排列。对于测试的最长WALP,这些影响最小,并随着WALP浓度的增加而增加。因此,我们的模拟解释了实验观察结果,即WALP在其他情况下仅形成纳米结构域的纯脂质混合物中诱导宏观结构域(未发表)。由于细胞质膜含有很大一部分跨膜蛋白,这些发现将体外纯脂质模型膜的行为与体内相行为联系起来。