Sanchez Enis, Lu Steven, Reed Carson, Schmidt Joshua, Forconi Marcello
Department of Chemistry and Biochemistry, College of Charleston, 202 Calhoun St, Charleston, SC 29424, U.S.A.
Academic Magnet High School, 5109 W Enterprise St, North Charleston, SC 29405. U.S.A.
J Phys Org Chem. 2016 Apr;29(4):185-189. doi: 10.1002/poc.3515. Epub 2015 Dec 1.
The Kemp elimination is prototypical reaction used to study proton abstraction from carbon. Several hydrophobic systems are known to accelerate this reaction, including two classes of computationally-designed enzymes. However, it is unclear whether these computationally-designed enzymes establish specific interactions with their substrates, as natural enzymes do, or if most of the rate acceleration is due to the hydrophobicity of the substrate. We used a simple system composed of cationic micelles and a long chain base (such as lauryl phosphate or lauric acid) to measure the rate acceleration for the Kemp elimination. Remarkably, we found that this simple system can accelerate the reaction by 4 orders of magnitude, approaching the rates of more complex designed systems. Use of different substrates suggests that the reaction takes place at the interface between the micellar head and water (the Stern layer) with the long-chain base embedded in the micelle and the substrate in the aqueous solution. Thus, we suggest that significant rate accelerations can be achieved regardless of the precise positioning of substrates. Because natural enzymes use specific interactions to position their substrates, we propose that acceleration of the Kemp elimination is not a suitable benchmark for the success of the design process, and we suggest that more complex reactions should be used.
肯普消除反应是用于研究从碳上夺取质子的典型反应。已知几种疏水体系可加速该反应,包括两类通过计算设计的酶。然而,尚不清楚这些通过计算设计的酶是否像天然酶那样与底物建立特异性相互作用,或者大部分反应速率加速是否归因于底物的疏水性。我们使用了一个由阳离子胶束和长链碱(如十二烷基磷酸酯或月桂酸)组成的简单体系来测量肯普消除反应的速率加速情况。值得注意的是,我们发现这个简单体系能将反应加速4个数量级,接近更复杂设计体系的反应速率。使用不同底物表明,反应发生在胶束头部与水之间的界面(斯特恩层),长链碱嵌入胶束中,底物存在于水溶液中。因此,我们认为无论底物的精确位置如何,都能实现显著的反应速率加速。由于天然酶利用特异性相互作用来定位其底物,我们提出肯普消除反应的加速不是设计过程成功的合适基准,我们建议应使用更复杂的反应。